Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02093 ATGGATCGGTTGCTGAAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACTGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGACGACAAGTGGTGGGAGGCAGTGGAGCTTCAGAAGCTTATTCTGGCTCACAATAGCATTGCATCGTTGAAGGAAGATCTGAGAAATTTGCCTTTTCTTGCTGTGTTGAATCTTAGCCACAACTCTCTTTCTCAGCTTCCAGCTGCTATTGGAGAGCTGCCTCAGTTGAAGATGTTGGATGTTTCATTCAATTCAATAGTTAACATACCAGAGGAGATTGGATCGGCTATGTCGCTTGTGAAGCTTGATTGTTCAAATAATCAGCTCACGGAACTTCCTAGCTCGCTTGGAAGATGCTTAGAATTGTCAGACTTAAAGGGATCAAACAATCTTATTACAAGTTTGCCAGAAGATTTAGCAAATTGTTCCAAATTGTCTAAACTAGATATGGAGGGGAACAAGCTAACAGTGATATCTGAAAATCTCATTTCATCATGGACCATGCTTACTGAATTCAATGCATCAAAAAATTTGCTGAATGGGATACCAACCAGCATTGGAGGCCTTTCACGTCTAATTCGTGTTTACGTTCATCAAAACAGAATATCAGCAATCCCTTCATCAATCATTGGTTGTCATTCACTTACAGAGCTTTATTTGGGGAATAACAATATTTCTACATTACCAGTGGAGATAGGGGCCCTTTCTCGCCTTGGGACTTTAGATCTTCACTCTAACCAGCTGAAGGACTATCCAGTAGAGGCATGCAAATTGAGTCTTTTAGTCTTGGATCTTTCTAATAATTCTTTGAGTGGGTTACCCCCTGAAATGGGTAAGATGACTACATTGAGGAAACTTCTGCTTAGTGGAAATCCTATGAGAACTCTTCGAAGCTCATTAGTATCTGGACCTACACCAGCATTACTGAAATTTCTCCGAAGCAGACTTTCTGAAGATGAAGATTCTGAAGCAGTAACCACAACAAAAGAGGTGATCGCAATGGCTACCCGATTGTCTATCACTTCAAAGGAACTTTCTATGGAAGGGCTGGGGTTGAGTGCTGTGCCATCAGAAGTATGGGAATCAGGGGAGGTGATAAAACTTAATCTTTCCAGAAACTCCATCCAGGAGTTGCCGGTTGAACTTTCTTCTTGTGTTTCCCTCCAGACATTGATTTTATCTAAGAATCAAATTAAAGAGTGGCCAGGTTCAATTCTTAAATCACTTTCGAGCCTTTCATGTTTGAAGCTGGATAACAATCCCCTCAAACAGATACCTTTGGATGGCTTTGAAGTGGTGCCTAAGCTTCAGATCCTGGATCTAAGTGGTAATGCAGCTTCATTACTAGATGTACCTGCATTTTCTAGTTTGCCATACCTGCAAGAGCTTTACCTAAGGAGAATGAGGCTCAGTGAAGTCCCATCAGATATAGTGGGGCTGCAACAGCTACGGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAGTGGGGTTAAAAGATCTCACTTCTCTCAAGGAACTCGACCTATCTAATAACAACATCTCAGTCCTTCTGCCCGAGCTGGGTTTGCTGGAGCCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTCAGAAGCATTCGAAGAACTGTCTTGGATAGAGGAACTAAAGCTGTTCTGCAATATTTGAAGGACAAATTGCCAGAGCAAGAGCAATAG 1761 0.4304 MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIASLKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKLDCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENLISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGNNNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTLRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITSKELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWPGSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQELYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIPVGLKDLTSLKELDLSNNNISVLLPELGLLEPSLQALRLDGNPLRSIRRTVLDRGTKAVLQYLKDKLPEQEQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02093 586 SUPERFAMILY L domain-like 361 562 - -
Gma12g02093 586 SMART LRR_typ_2 68 89 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 253 276 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 231 252 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 91 114 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 546 568 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 404 426 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 207 230 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 521 544 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 116 137 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 381 403 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 475 497 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 427 450 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 451 474 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 160 183 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 277 297 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 498 520 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 298 321 IPR003591 -
Gma12g02093 586 SMART LRR_typ_2 46 67 IPR003591 -
Gma12g02093 586 Pfam Leucine Rich Repeat 278 293 IPR001611 GO:0005515
Gma12g02093 586 Pfam BspA type Leucine rich repeat region (6 copies) 135 196 IPR026906 -
Gma12g02093 586 PRINTS Leucine-rich repeat signature 278 291 - -
Gma12g02093 586 PRINTS Leucine-rich repeat signature 521 534 - -
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Gma12g02093 586 Gene3D Ribonuclease Inhibitor 468 580 IPR032675 -
Gma12g02093 586 Gene3D Ribonuclease Inhibitor 325 467 IPR032675 -
Gma12g02093 586 SUPERFAMILY L domain-like 14 322 - -
Gma12g02093 586 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 137 228 - -
Gma12g02093 586 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 216 584 - -
Gma12g02093 586 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 132 - -
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 232 253 IPR001611 GO:0005515
Gma12g02093 586 SMART LRR_bac_2 114 133 - -
Gma12g02093 586 SMART LRR_bac_2 230 249 - -
Gma12g02093 586 SMART LRR_bac_2 275 295 - -
Gma12g02093 586 SMART LRR_bac_2 160 179 - -
Gma12g02093 586 SMART LRR_bac_2 498 517 - -
Gma12g02093 586 SMART LRR_bac_2 68 87 - -
Gma12g02093 586 SMART LRR_bac_2 521 541 - -
Gma12g02093 586 SMART LRR_bac_2 91 110 - -
Gma12g02093 586 SMART LRR_bac_2 380 399 - -
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 500 522 IPR001611 GO:0005515
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Gma12g02093 586 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Gma12g02093 586 Pfam Leucine rich repeat 47 104 IPR001611 GO:0005515
Gma12g02093 586 Pfam Leucine rich repeat 209 266 IPR001611 GO:0005515
Gma12g02093 586 Gene3D Ribonuclease Inhibitor 217 321 IPR032675 -
Gma12g02093 586 Gene3D Ribonuclease Inhibitor 114 216 IPR032675 -
Gma12g02093 586 Gene3D Ribonuclease Inhibitor 9 113 IPR032675 -
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Gma12g02093 586 PANTHER LRR RECEPTOR-LIKE KINASE 137 228 - -
Gma12g02093 586 PANTHER LRR RECEPTOR-LIKE KINASE 14 132 - -
Gma12g02093 586 PANTHER LRR RECEPTOR-LIKE KINASE 216 584 - -
Gma12g02093 586 ProSiteProfiles Leucine-rich repeat profile. 47 69 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02093 Gma-Chr12 41700310 41713260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02093 50 539 Receptor kinase-like Gene Family AT4G08850 28.986 6.60e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02093 - - gmx:100788118 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02093 12 41700310 41713260 Gma12g02093 12 41700310 41713260 ECH
Gma13g02468 13 39486020 39494341 Gma12g02093 12 41700310 41713260 GST