Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02452 ATGTGTTGTTGTACTTGGCCTACATGCAACTCTAGCTGGATGAAGATGGAGCCTTCTGGGTCTGCTTTTCAGAATTCTGGCAGTTCTAGGGCCTTGAACAGTTCTGGAGTCTCAGATAGGAACCAAAGGGTTCATTGTCCTCAAAGGAACCCCTTCTTGGGTGAGGCATCCCAGGATTCGGGGTTCAGAAAGGAAAGGGATAGGTTTCTGTTGGCTCAAGGTGGTCAGCCTAAGAACTTGGGCGGTGGTTTTTCGGGGTTGTGTGAGGACGAGGTGGAGGTTGACCCCTTTTTCTGTGCTGTAGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAACCTGAACGATCGGTGGGTGCCTTCGAATGCTTGCACATATTTAGGCAAATAGTAGAGATTGTCAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCTTCCTGCTTTGTCATGTCCTCTTTCAACCATATCTCATTTATTGAATCAGCATCTTGTTCAGATACTGGATCGGATTCTTTGGGAGAAGGATTAAACAACCAAGGCGGTGAGGTTAAAACTCCAACATCTCTCTGTCCCCATGATATGCCTCAGCAGAGTATGGGAAGTGAAGATTTTATGCCTGTCAAGACTTTAACCACCCCTGCTCAGTCAGATTCTAGTTGCATGTTGTCGAGTGCCGTGTATGCGGCTCGTGCATCATTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGAAAGGATGACGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGATACTACTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGGTGCTGGTGAATCTAGTTCTTGTGCTTCAGACGTTTATCGATTGGGGGTTCTCCTTTTTGAGCTATTTTGTCCGCTCAGCTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCTTTTTGTTTATGGTTACTGCATCCTGACCCTAGTGGTCGTCCAACACTCGGGGAGTTGTTGCAGAGCGACTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGATGATCAGGAGTTGCTGTTAGAATTCCTTTTATTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACATACTGTCTCTTTTCTGTGTTCAGATATTGAAGAAGTGACCAAGCAGCACGTTAGATTTAAAGAGATTACTGGTGCTGAACTGGGGAGTGATGAGCATTCAGCATCAAGTTTCCCATCCATGACAGTTGTTGATAGTGAGGGTTCTGCTTTTCTAGGGACTAGAAAACGAGTCAGACTAGGGATGGATGTTAAAAACATTGAGGAATGTGTCGATGATGTAGGGGATGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTTTTAACACGATGTAGACCAGCCTATTCCTCTGGGAAACTGGCGGTTAGACATCCACCTGTAACAAGTGATGGTAGAGGGTCTGTTGTCATGACTGAAAGAAGTTGCATCAATGACTTGAAATCTAAAGAGCAGTGCAGGGAGGGTGCGAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGCTAAAGGTTAAGGCTGACCTAAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGCTTTGATCGTGATGGAGAGTTTTTCGCTACTGCCGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATTCAATAATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTATATGTTGGAATACATATATCAAAAGTCAAATTGCTTCAAGCAACTTTGAAGGTGTTGTACAGTTATGGGATGTAACAAGAAGTCAAGTAATCTCTGAAATGAGGGAGCACGAGCGGCGGGTGTGGTCAATTGATTTCTCATCAGCAGACCCAACAATGTTAGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGTGGAATGTCAGCTTTGA 2196 0.4308 MCCCTWPTCNSSWMKMEPSGSAFQNSGSSRALNSSGVSDRNQRVHCPQRNPFLGEASQDSGFRKERDRFLLAQGGQPKNLGGGFSGLCEDEVEVDPFFCAVEWGDISLRQWLDKPERSVGAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNNQGGEVKTPTSLCPHDMPQQSMGSEDFMPVKTLTTPAQSDSSCMLSSAVYAARASLIEETEENKMKDRRKDDEVEGKKQSFPMKQILLMEMSWYTSPEEGAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSGRPTLGELLQSDFLNEQRDDMEEREAAIELRQRIDDQELLLEFLLLLQQRKQEVAEKLQHTVSFLCSDIEEVTKQHVRFKEITGAELGSDEHSASSFPSMTVVDSEGSAFLGTRKRVRLGMDVKNIEECVDDVGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLAVRHPPVTSDGRGSVVMTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVISEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAIPFLHLVECQL 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02452 731 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 683 718 - -
Gma13g02452 731 SMART WD40_4 634 673 IPR001680 GO:0005515
Gma13g02452 731 SMART WD40_4 676 716 IPR001680 GO:0005515
Gma13g02452 731 SMART WD40_4 588 623 IPR001680 GO:0005515
Gma13g02452 731 ProSiteProfiles Protein kinase domain profile. 1 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02452 731 Pfam WD domain, G-beta repeat 593 622 IPR001680 GO:0005515
Gma13g02452 731 Pfam WD domain, G-beta repeat 680 716 IPR001680 GO:0005515
Gma13g02452 731 Gene3D Transferase(Phosphotransferase) domain 1 105 375 - -
Gma13g02452 731 PANTHER PROTEIN SPA1-RELATED 3 20 720 - -
Gma13g02452 731 SUPERFAMILY Protein kinase-like (PK-like) 97 367 IPR011009 -
Gma13g02452 731 Gene3D - 569 728 IPR015943 GO:0005515
Gma13g02452 731 SMART serkin_6 13 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02452 731 MobiDBLite consensus disorder prediction 20 60 - -
Gma13g02452 731 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 718 IPR001680 GO:0005515
Gma13g02452 731 PANTHER PROTEIN SPA1-RELATED 2 20 720 IPR044630 GO:0009640
Gma13g02452 731 MobiDBLite consensus disorder prediction 20 45 - -
Gma13g02452 731 SUPERFAMILY WD40 repeat-like 594 719 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02452 Gma-Chr13 39306463 39312680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02452 593 717 Miscellaneous Gene Families AT5G08390 29.600 4.00e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02452 - - gmx:100809718 1439.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02109 12 41875431 41880547 Gma13g02452 13 39306463 39312680 ECH
Gma13g02452 13 39306463 39312680 Gma13g02452 13 39306463 39312680 ECH