Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02109 ATGTGTTGTTTTACTTGGCCTACATGCAATTCTAGCTGGGTGAAGATGGAGGGTTCTTCTGGGTCTGCTTTTCACAATTCTGGCAGTTCTAGGGCCTTGAATAGTTCCGGAGTCTCAGATAGGAATCAAAGGGTTCATTGTCCTCAAAGGAACCCCTTTTCGGGTGAGGCATCACAGGATTCGGGGTTTAGAAAGGAAAGGGATAGGGTTCTGTTGGCTCAAGGTGGTCAGCCTAAAAATTTGGGTGGCGGGTTTTCGGGGTTGTGTGAGGATGAGGTGGAGGTTGACCCCTTTTTCTGTGCTGTAGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAACCTGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAGATCGTTAGTGTAGCACATTCTCAAGGAGTTGTAGTTCACAATGTGAGGCCTTCCTGCTTCGTCATGTCATCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGATCGGATTCTTTAGGAGATGGAATGAACAACCAAGGCGGTGAGGTTAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGTTTGGGAAGTGAAGATTTTATGCCCATCAAGACTTCAACCACCCCTGCTCGGTCAGATTCTAGTTGCATGCTGTCGAGTGCCGTGTATGCAGCTCGTGCATCATTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGAAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGATACTACTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGGTGCTGGTGAATCTAGTTCTTGTGCTTCAGACGTTTATCGATTGGGGGTTCTCCTTTTTGAGCTATTTTGTCCGCTCAGCTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACACAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGACCCTAAGAGTCGTCCAACACTTGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAGAGAGATGATACGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGGATAGAGGATCAGGAGTTGTTGTTAGAGTTCCTTTTGTTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACATACTGTCTCTTTTCTGTGTTCAGATATTGAAGAAGTGACCAAGCAGCACGTTAGATTTAAAGAGATTACTGGTGCTGAACTGGGGAGTGATGAGCGTTCAGCATCAAGTTTCCCATCCATGACATTTGTTGATAGTGAGGATTCTGCTTTTCTAGGGACTAGAAAACGAGTCAGACTAGGGATGGATGTTAAAAACATTGAGGAATGTGACGATGATGTAGGGGATGATCAGAAAAGTAACGGAAGTTTTCTTTCAAAAAGTTCACGACTAATGAAGAACTTTAAGAAACTTGAGTCAGCTTACTTTTTAACACGATGTAGACCAGCCTATTCCTCTGGGAAACTGGCGGTTAGACATCCACCTGTAACAAGTGATGGTAGAGGGTCTGTTGTCGTGACTGAAAGAAGTTGCATCAATGACTTGAAATCTAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGCTAAAGGTTAAGGCTGACCTAAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGCTTTGATCGTGATGGAGAATTTTTCGCTACCGCGGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATTCAATAATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTATATGTTGGAATACATACATCAAAAGTCAAATTGCTTCAAGCAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTAATCTCTGAAATGAGGGAGCACGAGCGGCGGGTGTGGTCCATTGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGGAGTTAGTGTTGGTACCATCAAAACCAAGGCAAATGTTTGCTGCGTTCAGTTCCCCCTGGATTCTGCTCGTTTCCTTGCTTTTGGTTCAGCAGATCACCGAATATATTACTATGATCTTCGCAACCTTAAAATGCCACTTTGTACTTTAGTTGGACATAACAAGACTGTGAGCTACATCAAGTTTGTAGACACTGTGAACCTTGTCTCTGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACATGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCCTTCCCCATGCCAGCATTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCTGGCAACGAAGTGGACGATGCTGTGCAGTTCGTGTCCTCAGTCTGTTGGCACGGCCAGTCATCGTCCACCTTGCTCGCTGCAAATTCCACAGGGAATGTCAAAATTCTGGAGATGGTTTAA 2745 0.4324 MCCFTWPTCNSSWVKMEGSSGSAFHNSGSSRALNSSGVSDRNQRVHCPQRNPFSGEASQDSGFRKERDRVLLAQGGQPKNLGGGFSGLCEDEVEVDPFFCAVEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNNQGGEVKTPTSLCPHDMHQQSLGSEDFMPIKTSTTPARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEGAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPKSRPTLGELLQSEFLNEQRDDTEEREAAIELRQRIEDQELLLEFLLLLQQRKQEVAEKLQHTVSFLCSDIEEVTKQHVRFKEITGAELGSDERSASSFPSMTFVDSEDSAFLGTRKRVRLGMDVKNIEECDDDVGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLAVRHPPVTSDGRGSVVVTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVISEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQAIPFLHLGVSVGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHANVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGNEVDDAVQFVSSVCWHGQSSSTLLAANSTGNVKILEMV 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02109 914 MobiDBLite consensus disorder prediction 32 58 - -
Gma12g02109 914 MobiDBLite consensus disorder prediction 32 63 - -
Gma12g02109 914 SUPERFAMILY Protein kinase-like (PK-like) 88 363 IPR011009 -
Gma12g02109 914 ProSiteProfiles Protein kinase domain profile. 1 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g02109 914 PRINTS G protein beta WD-40 repeat signature 661 675 IPR020472 -
Gma12g02109 914 PRINTS G protein beta WD-40 repeat signature 704 718 IPR020472 -
Gma12g02109 914 PRINTS G protein beta WD-40 repeat signature 795 809 IPR020472 -
Gma12g02109 914 SMART WD40_4 635 674 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 677 717 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 727 766 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 589 624 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 770 808 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 817 856 IPR001680 GO:0005515
Gma12g02109 914 SMART WD40_4 876 912 IPR001680 GO:0005515
Gma12g02109 914 Gene3D - 570 914 IPR015943 GO:0005515
Gma12g02109 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 719 - -
Gma12g02109 914 ProSitePatterns Trp-Asp (WD) repeats signature. 795 809 IPR019775 -
Gma12g02109 914 PANTHER PROTEIN SPA1-RELATED 3 16 914 - -
Gma12g02109 914 Pfam WD domain, G-beta repeat 773 808 IPR001680 GO:0005515
Gma12g02109 914 Pfam WD domain, G-beta repeat 594 623 IPR001680 GO:0005515
Gma12g02109 914 Pfam WD domain, G-beta repeat 681 717 IPR001680 GO:0005515
Gma12g02109 914 SMART serkin_6 13 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g02109 914 PANTHER PROTEIN SPA1-RELATED 2 16 914 IPR044630 GO:0009640
Gma12g02109 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 811 IPR001680 GO:0005515
Gma12g02109 914 SUPERFAMILY WD40 repeat-like 594 912 IPR036322 GO:0005515
Gma12g02109 914 Gene3D Transferase(Phosphotransferase) domain 1 106 377 - -
Gma12g02109 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 719 IPR001680 GO:0005515
Gma12g02109 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02109 Gma-Chr12 41875431 41880547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02109 674 855 Miscellaneous Gene Families AT5G08390 25.543 3.80e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02109 - - gmx:100811457 1801.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02109 12 41875431 41880547 Gma13g02452 13 39306463 39312680 ECH
Gma12g02109 12 41875431 41880547 Gma12g02109 12 41875431 41880547 ECH