Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02413 ATGATCAGAAACGTTTCCAAAACTCCATACTTTATCTTTCTCCTTGTATTAGTAACAGTTGAGGTTCAAGGTCGCTATCTGCCAGAGCGTGCCACCGAACTAGTTTCAGATGGCGTTCATAATAACCTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAACCCTGCAAGCAAATGTACGGCTTCTTGCCATGCACAAACAATATTTTTGGCCATCTCTTTCTTATTTTGGTGTATGAATATTTGTTGTTCCATGGAGAATCATATTTGGCTAAAGGGGGTGAGCAAATTTTCAAGATTCTTGGTCCTGGTATCTTTGGTGCTAGTGCTTTTCAGATCCTTGGTGCCCTTCCAGAATCCTTAATTCTACTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCAGCGGGGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAGCCAAGAATTTGAGCATGATTCTCCCACTTCTAACTCTGCGCATACAAGTCTTAAAGCTTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTATACTGCAAGAATCATGGTTTGCTCAGTAATACCACTTGCAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGGGCTTAGAAGCGTGACCTTAGTAATTGCCCTCCTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAAACATGATCATTTAATATTGAAGATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGACTCCAAATGTGAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTCTGCTAAAAAACAAAGTAACTGAAACAAATTTTGATGAGGAGAAAGAAATAAAAGAGGTGTTAAAAGTTTTTGACCTGGATGGTGACAAGAAAATAAACAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACAAAGCATGCTTTAAAGAAACAGTATTTTTCAAGGAAATCACTCAAAGACATTTATCAGGCTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATTTGAAATCTTAAGGCATGTTCAGAGTGATGTGGTTGGTAGCCTTCTCACAGAAGATGGCAAACCTGATCAACATGCTATCAGAGGGTTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAGTCTGAGTTGAAAGAACTAATCATGAATATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACATTGACAAAGACCGCACAATTAATGAGAAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCTGTGTCAGATTCTGAGTCTCAAGAAGATATGTTTCAGACCTGGGAAGAGGCTGACATCGTAGTGGAAGAGAGGCAAAGCAATGCAGTAGTTGATAAATCAATATGGGCATGGATTAAGGCCATAACATATGTTATGCTAGGAATTGCTATGCTATCAATTTTGGCAGAGCCACTGACAGAAAGTGTCCACAACTTCTCTAACAGTGCAGGATTCCATCCATTCTTCATGTCATTTATTCTAGCTCCCTTGGCTACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCCAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTCGGTTTCTTTGCAATCTCGGTTCTGATCTTTGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTTGTTGCAATTGTTTGTGCAATAACGGGCATTACTGCAAGTTTTCACTCCATTTTCCCTATATGGTCATCCTTCATTGCAATTCTCTTATACCCATTGTCTTTGGTTCTGGTTTTTATACTTGACCATGTTCTCAATTATAATTAA 2139 0.3922 MIRNVSKTPYFIFLLVLVTVEVQGRYLPERATELVSDGVHNNLQHNETSYLVLKGIDDESFEEPCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQIFKILGPGIFGASAFQILGALPESLILLVSGLVSNREIAQEYAFSGVGLLAGSSILLLTVVWGSCVIAGSQEFEHDSPTSNSAHTSLKALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPNLFQFSSGLRSVTLVIALLITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEKEIKEVLKVFDLDGDKKINKEEFVSGFTKWLDQTKHALKKQYFSRKSLKDIYQAFGPWIENKRKEREGKKQLIFEILRHVQSDVVGSLLTEDGKPDQHAIRGLFEKIDRNRDNFISQSELKELIMNIKFVKASMEVEEAVALVIEELDIDKDRTINEKEFVAGFEKWLSSTSAPAPVSDSESQEDMFQTWEEADIVVEERQSNAVVDKSIWAWIKAITYVMLGIAMLSILAEPLTESVHNFSNSAGFHPFFMSFILAPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISVLIFVREVTWQFSAELLVVAIVCAITGITASFHSIFPIWSSFIAILLYPLSLVLVFILDHVLNYN 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02413 712 Gene3D - 370 510 - -
Gma13g02413 712 CDD EFh 306 371 IPR002048 GO:0005509
Gma13g02413 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 394 516 - -
Gma13g02413 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 386 - -
Gma13g02413 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 553 711 - -
Gma13g02413 712 Gene3D - 261 369 - -
Gma13g02413 712 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Gma13g02413 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 553 711 - -
Gma13g02413 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 394 516 - -
Gma13g02413 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 8 386 - -
Gma13g02413 712 Pfam Sodium/calcium exchanger protein 561 702 IPR004837 GO:0016021|GO:0055085
Gma13g02413 712 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Gma13g02413 712 CDD EFh 443 507 IPR002048 GO:0005509
Gma13g02413 712 ProSiteProfiles EF-hand calcium-binding domain profile. 341 376 IPR002048 GO:0005509
Gma13g02413 712 ProSiteProfiles EF-hand calcium-binding domain profile. 301 336 IPR002048 GO:0005509
Gma13g02413 712 SUPERFAMILY EF-hand 304 512 IPR011992 -
Gma13g02413 712 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Gma13g02413 712 SMART efh_1 305 333 IPR002048 GO:0005509
Gma13g02413 712 SMART efh_1 442 470 IPR002048 GO:0005509
Gma13g02413 712 SMART efh_1 482 510 IPR002048 GO:0005509
Gma13g02413 712 SMART efh_1 345 373 IPR002048 GO:0005509
Gma13g02413 712 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Gma13g02413 712 Pfam EF-hand domain pair 443 506 IPR002048 GO:0005509
Gma13g02413 712 ProSitePatterns EF-hand calcium-binding domain. 354 366 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02413 Gma-Chr13 38888788 38896882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02413 394 712 EF-hand Containing Proteins AT1G53210 40.663 1.31e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02413 - - gmx:100798009 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02139 12 42236490 42241277 Gma13g02413 13 38888788 38896882 ECH
Gma13g02413 13 38888788 38896882 Gma13g02413 13 38888788 38896882 ECH