Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02139 ATGAGAAGAACCATGTCAAATGCATCAGCATGCTTCTTTTTCTTTGCTTTTGTAGTATTAGTAGCACTTCATAATGCTGAATGCCGTTCTCTTCGGCCTAGTGTTTCTGATGGGGTTGATGCAGTTCAATTACCTCAAGAGTCTTCTTATCTACAACTCAAAGACCAAAGTGTTGTTGTCGAGTCTTCTTCTGATGAGCATTTCTGTAAGCAAATGTACGGGTTCTTGCCATGTTCCAATAACATACTTGGCCATCTCTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCACGGAGAATCATATTTGGCTGCTGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCTCTTCCTGAGTCATTAATTCTTGTTGTTACTGGACTTTCCAGCGATAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTTGGTTTGTTGGCTGGATCATCCATTATGCTTCTGACAGTAGTTTGGGGGACCTGTGTTTTCATTGGCAGACAAAAGTTGAAAAATGACTCTAACTATGGTGGCACAAATTCATCAAGTGGAGGAATAAAAGAATCACTAACTGGTTATGGTATCACTATGGATGTAGATACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTCCTCATAATGCAGATTCCCAGTATATTCAACTTCTCTTCTATTCCACGCAATGTGACCTTGATGGTTGCTCTTACAGTTGCTGTTGCTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATTGAGAAAACAAGACTGGAGTATATAAAACATGATGACTTAATATTAAGAATTTTTCAACGTGTCGAAAAACAAACTCTACAAAAGATCCTGACCGATGATGGGACTCCCAATGTAGCTGCAATAAGTGGGCTGTATCATGAAATTAGTCAACGTGGGGGCAAGGACTTGTTAGCTTCTGAAGTGAAAGAGTTGTTATTTGGAACAAAATTAAATGACACAAATATCAAAGAGGAACAGATAGCAGACATGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGCTTAACAGAATACATTAACCAATCAAAGCATGCTCTGGATAGACAATACCTCCCCAAAGAATCTCTCAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACACGTGAGAAAACAACGTGAATTGAAGGGACATCTTATATCTGAAGTCTTGAAGCATGCTCAGAATGATATGGTTGGCCGGCTGCGCCAAGATGATGGCACACCTGACAAAATTGCTATCAAAAGGTTGTTTGAGGAAATTGATGTTAACCAAGATAACCACATTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGACATCCAGTTTGGCAAGGCTGTAGAAACTGAGGAGGCAGTTACAAAACTTGTTCAAGATCTTGATCTCAACAGAGATGATGAAATTAGCGAGACCGAGTTTGTTGAAGGCTTTACAAAATGGATGAACTCAAATTCCAGCCAAGCTGCTAACTCAAAATCTTCGTCTCACGAAATTCGTCGAACCTGGGAAGATGTTGAAAAGGTAATAGAAGAGAATCAAACCAAAGGAACATCTGCATGGTTGACGGCTATAGGATATGTGGTGTTGGGAGTTACTATACTGGCTCTTCTTGCAGAACCCTTAATAGCAAGTGTCCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGACCAGTAATACTTCTCAAACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATACTTATATACATGCGTGAGATCACTTGGGAATTCTCCGCTGATGTGCTAGTCGTGGCAATAGTTTGTGCTGTAACGGGCCTCACTGCTAGTTTTCGACCCACTTTTCCTCTTTGGACATCTTTCCCTGCATACCTCATGTACCTAGTAGCATTGCTTTTGGTCTTCGTCCTCAAAGATGTTCTCAATTATGTTTAG 2136 0.397 MRRTMSNASACFFFFAFVVLVALHNAECRSLRPSVSDGVDAVQLPQESSYLQLKDQSVVVESSSDEHFCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSIMLLTVVWGTCVFIGRQKLKNDSNYGGTNSSSGGIKESLTGYGITMDVDTRKMARIMVFSVIPLLIMQIPSIFNFSSIPRNVTLMVALTVAVAFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILTDDGTPNVAAISGLYHEISQRGGKDLLASEVKELLFGTKLNDTNIKEEQIADMLKVFDRNGDQIITKEEFVTGLTEYINQSKHALDRQYLPKESLNKMYQTFIKPWIEHVRKQRELKGHLISEVLKHAQNDMVGRLRQDDGTPDKIAIKRLFEEIDVNQDNHISRSELEKVVKDIQFGKAVETEEAVTKLVQDLDLNRDDEISETEFVEGFTKWMNSNSSQAANSKSSSHEIRRTWEDVEKVIEENQTKGTSAWLTAIGYVVLGVTILALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKTSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWEFSADVLVVAIVCAVTGLTASFRPTFPLWTSFPAYLMYLVALLLVFVLKDVLNYV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02139 711 CDD EFh 449 513 IPR002048 GO:0005509
Gma12g02139 711 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Gma12g02139 711 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Gma12g02139 711 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Gma12g02139 711 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Gma12g02139 711 Pfam EF-hand domain pair 448 512 IPR002048 GO:0005509
Gma12g02139 711 Gene3D - 306 386 - -
Gma12g02139 711 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 556 710 - -
Gma12g02139 711 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 13 392 - -
Gma12g02139 711 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 399 534 - -
Gma12g02139 711 SUPERFAMILY EF-hand 334 517 IPR011992 -
Gma12g02139 711 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Gma12g02139 711 Gene3D - 387 528 - -
Gma12g02139 711 SMART efh_1 487 515 IPR002048 GO:0005509
Gma12g02139 711 SMART efh_1 350 378 IPR002048 GO:0005509
Gma12g02139 711 SMART efh_1 448 476 IPR002048 GO:0005509
Gma12g02139 711 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 13 392 - -
Gma12g02139 711 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 399 534 - -
Gma12g02139 711 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 556 710 - -
Gma12g02139 711 Pfam Sodium/calcium exchanger protein 559 702 IPR004837 GO:0016021|GO:0055085
Gma12g02139 711 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02139 Gma-Chr12 42236490 42241277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02139 399 704 EF-hand Containing Proteins AT1G53210 40.000 5.99e-60 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02139 - - gmx:100800452 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02139 12 42236490 42241277 Gma13g02413 13 38888788 38896882 ECH
Gma12g02139 12 42236490 42241277 Gma12g02139 12 42236490 42241277 ECH