Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01257 ATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTTTCCTTCAAGATCTTGTTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAACTCTGCTGAAGATATTGCTCCCACAATTGGTGTTGATTTTAAGATCAAGATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTGTTTATGATGTAACGAGAAGAGACACCTTCACAAACTTATCTTTAGTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGAATATTCTAAAGCAACAACAACAACCCCAAGCATCCGAATTTGGTGGTTGTTGCTCTTAA 636 0.4104 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSAEDIAPTIGVDFKIKMLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSLVWSKEVELYSTNQNCVKMLVGNKVDRDSERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVPSLLEEGSTAVKRNILKQQQQPQASEFGGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01257 211 SMART ras_sub_4 12 179 - -
Gma13g01257 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Gma13g01257 211 CDD Rab18 15 176 - -
Gma13g01257 211 Gene3D - 8 210 IPR027417 -
Gma13g01257 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Gma13g01257 211 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Gma13g01257 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
Gma13g01257 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Gma13g01257 211 PANTHER DRAB5-RELATED 1 211 - -
Gma13g01257 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Gma13g01257 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Gma13g01257 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Gma13g01257 211 SMART rab_sub_5 15 179 - -
Gma13g01257 211 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Gma13g01257 211 SMART ran_sub_2 20 206 - -
Gma13g01257 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Gma13g01257 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Gma13g01257 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Gma13g01257 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Gma13g01257 211 PRINTS Transforming protein P21 ras signature 154 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01257 Gma-Chr13 26875007 26878917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01257 9 191 EF-hand Containing Proteins AT5G27540 26.702 2.42e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01257 K07910 - gmx:100818801 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01257 13 26875007 26878917 Gma13g01257 13 26875007 26878917 ECH
Gma10g00545 10 5600751 5604122 Gma13g01257 13 26875007 26878917 GST
Gma19g01759 19 46900913 46904004 Gma13g01257 13 26875007 26878917 PCT
Gma03g01709 03 43260987 43264757 Gma13g01257 13 26875007 26878917 PCT
Gma13g01257 13 26875007 26878917 Gma19g01759 19 46900913 46904004 PCT
Gma13g01257 13 26875007 26878917 Gma03g01709 03 43260987 43264757 PCT