Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00545 ATGAATTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGCTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTGCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTAACGAGAAGAGACACCTTCACAAACTTATCAGAAGTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTGAAGATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTAAAAAGGAATATTCTAAAGCAACAACAGGAACAACCCCAAGCATCCGAATTTGGTGGTTGTTGCTCTTAA 639 0.4147 MNSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSAEDIAPTIGVDFKIKMLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQNCVKMLVGNKVDRDSERVVSKEEGLALAEELGCLFFECSAKTRENVERCFEELALKIMEVPSLLEEGSTAVKRNILKQQQEQPQASEFGGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00545 212 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Gma10g00545 212 CDD Rab18 15 176 - -
Gma10g00545 212 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Gma10g00545 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 197 IPR027417 -
Gma10g00545 212 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Gma10g00545 212 SMART rab_sub_5 15 179 - -
Gma10g00545 212 ProSiteProfiles small GTPase Rab1 family profile. 10 212 - -
Gma10g00545 212 ProSiteProfiles small GTPase Ras family profile. 6 212 IPR001806 GO:0003924|GO:0005525
Gma10g00545 212 SMART ras_sub_4 12 179 - -
Gma10g00545 212 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Gma10g00545 212 PANTHER DRAB5-RELATED 1 212 - -
Gma10g00545 212 SMART ran_sub_2 20 207 - -
Gma10g00545 212 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 212 - -
Gma10g00545 212 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Gma10g00545 212 Gene3D - 5 208 IPR027417 -
Gma10g00545 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Gma10g00545 212 PRINTS Transforming protein P21 ras signature 37 53 - -
Gma10g00545 212 PRINTS Transforming protein P21 ras signature 55 77 - -
Gma10g00545 212 PRINTS Transforming protein P21 ras signature 119 132 - -
Gma10g00545 212 PRINTS Transforming protein P21 ras signature 154 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00545 Gma-Chr10 5600751 5604122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00545 9 196 EF-hand Containing Proteins AT5G27540 26.531 2.24e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00545 K07910 - gmx:100807498 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00545 10 5600751 5604122 Gma10g00545 10 5600751 5604122 ECH
Gma10g00545 10 5600751 5604122 Gma13g01257 13 26875007 26878917 GST
Gma19g01759 19 46900913 46904004 Gma10g00545 10 5600751 5604122 PCT
Gma03g01709 03 43260987 43264757 Gma10g00545 10 5600751 5604122 PCT
Gma10g00545 10 5600751 5604122 Gma19g01759 19 46900913 46904004 PCT
Gma10g00545 10 5600751 5604122 Gma03g01709 03 43260987 43264757 PCT