Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01114 ATGGTGGGAATCTTTTCGTTGATTACAGGGAGACCGGGATGTAGTGGATTCGGATCTTCCTCAACTGCTGAACAGGTTATCGAAGGAATTGATGCCAGCAACCTCACTGCAATCATCACAGGAGGAGCCAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGCCCATGTCATAATTGCTGCCAGAAACATGGAGTCTGCAAAGGAAGCGAAACAACTCATACTTGAGGAAGACGAGTCAGCTCGTGTGGACATAATGAAGCTCGACCTATGCTCAGTGAAGTCTGTCGGAACCTTTGTGGACAACTTCATTGCTCTTGGTGTTCCTCTTAACATCTTAATAAACAACGCGGGAGTCATGTTCTGCCCTTATCAGCAAACGGAAGATGGGATTGAGATGCAGTTTGCAACCAATCATCTTGGTCATTTTCTCTTGACGAAACTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCATAAATCTTTCATCAATAGCTCATGTCTACACTTACGAAGAAGGAATTCGATTTGATAACATCAATGATGAAGATGGATACTCTGACAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAATTTTCTGAAGATGTTTACCTTTTTCGCATGGAAGAACATCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACTTTCGGGATTGTAATGAGTGTCAACCAAGTACACATGCTTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGA 972 0.4424 MVGIFSLITGRPGCSGFGSSSTAEQVIEGIDASNLTAIITGGASGIGLETARVLAIRKAHVIIAARNMESAKEAKQLILEEDESARVDIMKLDLCSVKSVGTFVDNFIALGVPLNILINNAGVMFCPYQQTEDGIEMQFATNHLGHFLLTKLLLDKMKQTAKDTGIEGRIINLSSIAHVYTYEEGIRFDNINDEDGYSDKKAYGQSKLANILHTNELSRRLQAEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFAWKNIPQGAATTCYVALHPSLKGVTGKYFRDCNECQPSTHASNELLGRKLWDFSNKMINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01114 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Gma13g01114 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Gma13g01114 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Gma13g01114 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Gma13g01114 323 Gene3D - 29 320 - -
Gma13g01114 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Gma13g01114 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Gma13g01114 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Gma13g01114 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Gma13g01114 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Gma13g01114 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Gma13g01114 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Gma13g01114 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Gma13g01114 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01114 Gma-Chr13 25318018 25323249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01114 35 242 Miscellaneous Gene Families AT2G29340 28.111 9.10e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01114 K11153 - gmx:100807056 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00410 10 3955751 3960222 Gma13g01114 13 25318018 25323249 GST
Gma19g01634 19 45745082 45748959 Gma13g01114 13 25318018 25323249 PCT
Gma03g01584 03 42116485 42120828 Gma13g01114 13 25318018 25323249 PCT
Gma13g01114 13 25318018 25323249 Gma19g01634 19 45745082 45748959 PCT
Gma13g01114 13 25318018 25323249 Gma03g01584 03 42116485 42120828 PCT