Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00410 ATGGCGGGAATCTTTTCGTTGGTTACTGGGAGGCCGGGACTAAGTGGATTCGGATCTTCCTCAACTGCTGAACAAGTTACTGAAGGAATTGATGCCAGCAATCTCACTGCAATCATCACAGGAGGAGCGAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGTCCATGTAATAATTGCTGCCAGGAACATGGAGTCTGCAAAGGAAGCTAAACAACTCATACTTCAGGAAGACGAGTCAGCATGTGTGGACATAATGAAGCTCGACCTATGCTCATTGAAGTCTGTCAGAACCTTTGTGGACAACTTCATTGCTCTTGGTCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTATCAGCAAACAGAAGATGGGATTGAGATGCAGTTTGCAACAAATTATCTTGGTAGTCATTTCCTCTTGACGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCGTAAATCTGTCATCAATTGCTCATCTCTACACTTACGAAGAAGGAATTCGATTTGATACCATCAATGATGAAGATGGATACCATGAGAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTAATGAATTTTCTGAAGATGTTCTCCTTCATGATATGGAAGAACGTCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACCTTCAGGATTGTAATGAGTCCCCACCAAGTGCACATGCGTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGA 975 0.4441 MAGIFSLVTGRPGLSGFGSSSTAEQVTEGIDASNLTAIITGGASGIGLETARVLAIRKVHVIIAARNMESAKEAKQLILQEDESACVDIMKLDLCSLKSVRTFVDNFIALGLPLNILINNAGVMFCPYQQTEDGIEMQFATNYLGSHFLLTNLLLDKMKQTAKDTGIEGRIVNLSSIAHLYTYEEGIRFDTINDEDGYHEKKAYGQSKLANILHTNELSRRLQAEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFSFMIWKNVPQGAATTCYVALHPSLKGVTGKYLQDCNESPPSAHASNELLGRKLWDFSNKMINSLSKA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00410 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 297 IPR036291 -
Gma10g00410 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Gma10g00410 324 Pfam short chain dehydrogenase 36 246 IPR002347 -
Gma10g00410 324 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Gma10g00410 324 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Gma10g00410 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Gma10g00410 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Gma10g00410 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Gma10g00410 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Gma10g00410 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Gma10g00410 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Gma10g00410 324 PANTHER RETINOL DEHYDROGENASE 5 321 - -
Gma10g00410 324 Gene3D - 26 321 - -
Gma10g00410 324 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00410 Gma-Chr10 3955751 3960222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00410 35 243 Miscellaneous Gene Families AT2G29150 29.358 2.55e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00410 K11153 - gmx:100795299 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00410 10 3955751 3960222 Gma10g00410 10 3955751 3960222 ECH
Gma10g00410 10 3955751 3960222 Gma13g01114 13 25318018 25323249 GST
Gma19g01634 19 45745082 45748959 Gma10g00410 10 3955751 3960222 PCT
Gma03g01584 03 42116485 42120828 Gma10g00410 10 3955751 3960222 PCT
Gma10g00410 10 3955751 3960222 Gma19g01634 19 45745082 45748959 PCT
Gma10g00410 10 3955751 3960222 Gma03g01584 03 42116485 42120828 PCT