Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01106 ATGGGTCAGGGAACTCCGGGCGGCATGAACCGGCAGGGCGACCGGAAGCCGGACGGCGGCGACAAGAAGGAGAAGAAGTTCGAGCCGTCGGCTCCGCCGGCGCGCGTGGGGCGGAAACAGCGGAAGCAGAAAGGTCCGGAGGCGGCGGCGCGGTTGCCGACAGTGACTCCGGTGACGAAGTGCAAACTGCGGCTTCTGAAGCTGGAGCGGATCAAGGACTACCTTCTGATGGAGGAGGAGTTCGTGGCGAATCAGGAGCGACTCAAGCCGCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAGGTCGATGATCTCCGAGGCTCTCCCATGAGCGTCGGAAACCTCGAAGAGCTCATCGACGAGAATCACGCTATTGTCTCCTCCTCCGTTGGGCCTGAGTACTATGTCGGAATCCTGTCTTTCGTTGATAAGGATCAGTTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGgttctttctgttgttgggcttcttcaagatgaagttgatccaatggtctctgtcatgaaggttgagaaggctcctctggaatcttatgctgacattggtggtttagatgcccaaatacaggaaattaaagaagcagttgagctacccctgacGCATCCTGAACTATATGAAGACATTGGTATCAAGCCTCCTAAGGGGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAACTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTAAGAGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATtgatgaaattgatgcagttggtacaaaaaggtatgatgctcactcaggaggagaacgtgaaattcaaaggaccatgctagagttgctgaaccagttagatggttttgattcaagaggagatgtgaaagtgattctggcaaccaacagaattgaaagtcttgatccagctttgctacgacctggtcgaattgacaggaagatagaattTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTCCAGATACACACGTCAAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGACGAATTCTCCGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGTTTACTTGCTCTACGAGAACGTCGAATGAAGGTGACTCATGCCGACTTTAAGAAGGCCAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGGCTGTATATGTGA 1332 0.3671 MGQGTPGGMNRQGDRKPDGGDKKEKKFEPSAPPARVGRKQRKQKGPEAAARLPTVTPVTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01106 443 MobiDBLite consensus disorder prediction 87 105 - -
Gma13g01106 443 Pfam ATPase family associated with various cellular activities (AAA) 225 358 IPR003959 GO:0005524|GO:0016887
Gma13g01106 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Gma13g01106 443 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 78 430 IPR005937 GO:0005737|GO:0030163|GO:0036402
Gma13g01106 443 MobiDBLite consensus disorder prediction 14 32 - -
Gma13g01106 443 MobiDBLite consensus disorder prediction 87 108 - -
Gma13g01106 443 Pfam Proteasomal ATPase OB C-terminal domain 112 165 IPR032501 -
Gma13g01106 443 ProSitePatterns AAA-protein family signature. 328 346 IPR003960 GO:0005524|GO:0016887
Gma13g01106 443 CDD AAA 191 358 - -
Gma13g01106 443 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 16 443 - -
Gma13g01106 443 Gene3D - 110 177 IPR012340 -
Gma13g01106 443 Gene3D - 363 437 - -
Gma13g01106 443 Pfam AAA+ lid domain 380 424 IPR041569 -
Gma13g01106 443 SMART AAA_5 221 360 IPR003593 -
Gma13g01106 443 Gene3D - 178 358 IPR027417 -
Gma13g01106 443 MobiDBLite consensus disorder prediction 1 53 - -
Gma13g01106 443 PANTHER BNAA08G13550D PROTEIN 16 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01106 Gma-Chr13 25231320 25235326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01106 186 428 Miscellaneous Gene Families AT3G47060 44.355 3.30e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01106 K03062 - gmx:100802442 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00402 10 3876260 3880666 Gma13g01106 13 25231320 25235326 GST
Gma19g01625 19 45682419 45688259 Gma13g01106 13 25231320 25235326 PCT
Gma03g01573 03 42021234 42026226 Gma13g01106 13 25231320 25235326 PCT
Gma13g01106 13 25231320 25235326 Gma19g01625 19 45682419 45688259 PCT
Gma13g01106 13 25231320 25235326 Gma03g01573 03 42021234 42026226 PCT