LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01573	ATGGGTCAGGGAACACCGGGCGGTCTGAACCGGCAGGGTCTTCCGGGGGACCGGAAGCCGGACGGCGGCGACAAGAAGGAGAAAAAGTTCGAGCCGGCGGCCCCGCCGGCCCGCGTGGGGCGTAAGCAGCGGAAGCAGAAGGGACCGGAGGCGGCGGCGCGGCTGCCGACGGTGACGCCGCTGTCGAAGTGCAAGCTGCGGCTGCTGAAGCTGGAGCGCATAAAGGACTACCTCTTGATGGAGGAGGAGTTTGTGGCGAACCAGGAGAGGCTGAAACCACAGGAGGAGAAGGCCGAGGAAGATAGATCCAAGGTCGATGATCTCAGAGGTTCCCCTATGAGCGTTGGTAACCTCGAGGAACTCATCGACGAGAATCATGCCATCGTTTCGTCCTCGGTGGGGCCCGAGTACTATGTTGGTATTTTGTCTTTCGTTGATAAGGATCAGCTCGAACCTGGATGCGCTATTTTGATGCATAACAAGgttctctctgttgttgggcttcttcaagatgaagttgatccaatggtctctgttatgaaggtcgaaaaggcccctttggaatcatatgctgatattggtggtttagatgctcagatacaggaaattaaagaagcagttgagcttcccctgacACATCCTGAACTGTATGAAGACATTGGTATCAAGCCTCCTAAGGGAGTTATTTTATATGGGGAACCAGGAACTGGGAAGACATTGCTTGCAaagGCTGTGGCAAACTCAACATCAGCAACCTTTTTGCGTGTTGTTGGTAGTGAATTAATACAAAAATACTTGGGAGATGGTCCAAAGCTTGTAAGGGAACTTTTCCGAGTTGCTGATGATCTTTCCCCATCTATTGTCTTCATtgatgagatagacgctgttggtactaagaggtatgatgcccactctggtggagaacgtgaaattcagaggactatgttggagttgctgaaccagttagatggttttgattcaagaggagacgtaaaagttattcttgcaaccaacagaattgaaagccttgatccagccttgctgcgacctggtcgaattgacaggaagattgaattTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACTGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGTTTAAGAAGAAAGAAGGAGTGCCCGAAGGACTGTATATGTGA	1341	0.3639	MGQGTPGGLNRQGLPGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g01573	446	Pfam	AAA+ lid domain	383	427	IPR041569	-
	Gma03g01573	446	Gene3D	-	113	180	IPR012340	-
	Gma03g01573	446	PANTHER	BNAA08G13550D PROTEIN	19	446	-	-
	Gma03g01573	446	Pfam	ATPase family associated with various cellular activities (AAA)	228	361	IPR003959	GO:0005524\|GO:0016887
	Gma03g01573	446	MobiDBLite	consensus disorder prediction	90	110	-	-
	Gma03g01573	446	Pfam	Proteasomal ATPase OB C-terminal domain	115	168	IPR032501	-
	Gma03g01573	446	MobiDBLite	consensus disorder prediction	90	108	-	-
	Gma03g01573	446	MobiDBLite	consensus disorder prediction	1	55	-	-
	Gma03g01573	446	MobiDBLite	consensus disorder prediction	17	35	-	-
	Gma03g01573	446	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	439	IPR027417	-
	Gma03g01573	446	ProSitePatterns	AAA-protein family signature.	331	349	IPR003960	GO:0005524\|GO:0016887
	Gma03g01573	446	CDD	AAA	194	361	-	-
	Gma03g01573	446	Gene3D	-	366	440	-	-
	Gma03g01573	446	PANTHER	26S PROTEASOME REGULATORY SUBUNIT	19	446	-	-
	Gma03g01573	446	TIGRFAM	26Sp45: 26S proteasome subunit P45 family	81	433	IPR005937	GO:0005737\|GO:0030163\|GO:0036402
	Gma03g01573	446	Gene3D	-	181	361	IPR027417	-
	Gma03g01573	446	SMART	AAA_5	224	363	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01573	Gma-Chr3	42021234	42026226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01573	189	431	Miscellaneous Gene Families	AT3G47060	44.355	4.05e-55	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01573	K03062		-	gmx:100798835	868.226

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma03g01573	03	42021234	42026226	Gma03g01573	03	42021234	42026226	ECH
	Gma19g01625	19	45682419	45688259	Gma03g01573	03	42021234	42026226	GST
	Gma03g01573	03	42021234	42026226	Gma10g00402	10	3876260	3880666	PCT
	Gma03g01573	03	42021234	42026226	Gma13g01106	13	25231320	25235326	PCT
	Gma10g00402	10	3876260	3880666	Gma03g01573	03	42021234	42026226	PCT
	Gma13g01106	13	25231320	25235326	Gma03g01573	03	42021234	42026226	PCT