Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00832 ATGGCAAGTGAGATATTTCTTGCCCTTCTGATCACAACCTTTGTGGTTGCAGCCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAATAGTGGGGAACTTCTCACCTTGTCCCTAGACAAGACCTCTGGCTCTGGATTTCGTTCTAGGAATGAGTACTTGTTTGGAAAAATTGACATGCAACTAAAACTCGTGCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGGGATACTCATGATGAAATTGATTTTGAATTTCTGGGTAACTTGAGTGGTGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGTAACAGGGAACAGCAGTTCTATCTGTGGTTCGACCCCACCCAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATCTTGAATCAAAAGGGGTTTCTTTTCCCAAAAACCAACCCATGAGGATATATTCAAGCCTTTGGAACGCTGATGATTGGGCCACAAGGGGAGGCCTAGTGAAGACTGATTGGAGCCAAGCCCCATTCACAGCCTCTTACAGAAAGTTCAATGCCCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCATCTTGCTCCTCCAACAATCCATCATCAAACCAAGCATGGTTGAAACAATCACTGGATTCAACAGGGCAAGCTAGGATTCAGTGGGTCCAAAAGAACTACATGATTTACAACTACTGCACTGACACTAAGCGTTTCCCACAGGGCCTTCCTCCTGAGTGCACAATCGCATGA 852 0.4472 MASEIFLALLITTFVVAASAGNFNQDFEITWGDGRAKILNSGELLTLSLDKTSGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTQDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVSFPKNQPMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRKFNAQACVWTSSSGSSCSSNNPSSNQAWLKQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00832 283 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Gma13g00832 283 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Gma13g00832 283 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Gma13g00832 283 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 282 IPR013320 -
Gma13g00832 283 ProSitePatterns Glycosyl hydrolases family 16 active sites. 97 107 IPR008263 GO:0004553|GO:0005975
Gma13g00832 283 Gene3D - 9 282 - -
Gma13g00832 283 PIRSF EndGlu_transf 1 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma13g00832 283 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 282 - -
Gma13g00832 283 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 211 IPR000757 GO:0004553|GO:0005975
Gma13g00832 283 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 282 IPR044791 GO:0004553
Gma13g00832 283 CDD GH16_XET 18 280 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma13g00832 283 Pfam Glycosyl hydrolases family 16 24 203 IPR000757 GO:0004553|GO:0005975
Gma13g00832 283 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 280 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00832 Gma-Chr13 22612312 22613652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00832 3 283 Glycoside Hydrolase AT4G25810 73.665 1.50e-156 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00832 K14504 - gmx:100807063 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00832 13 22612312 22613652 Gma15g01577 15 15306334 15308602 PCT
Gma13g00832 13 22612312 22613652 Gma09g00568 09 6087664 6090430 PCT
Gma15g01577 15 15306334 15308602 Gma13g00832 13 22612312 22613652 PCT
Gma09g00568 09 6087664 6090430 Gma13g00832 13 22612312 22613652 PCT