Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00568 ATGATGAAAAATATTGGGTTGTTTCTTCTTGTGGTGGTGGCTACTTTTGTGGTGGCAGCCACAGCTGGTAGCTTTTACCAAGACTTTGAAATAACATGGGGTGGTGAGCGTGCCAAAATCTATGAAAATGGAAATCTTCTCACCCTCTCCCTAGACAGAGCCTCTGGCTCTGGCTTTCGTTCCAAAAAAGAATACTTGTTCGGAAAAATTGACATGCAGCTCAAGCTCGTGCCTGGTAACTCTGCTGGAACAGTCACTGCCTATTATTTATCTTCTCTGGGGCCTACTCATGACGAAATAGACTTCGAGTTTTTGGGTAACTTGAGTGGTGATCCTTATACTCTCCACACGAACGTATTCAGCCAAGGGAAAGGGAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCCGTCCAATGGAATCCTGCAAGCATCATATTCTCTGTGGATGGGACACCAATAAGGGAGTTCAAGAATTTGGAGACAAAAGGGGTTCCTTTCCCAAAGAACCAACCCATGAGAATATACTCTAGCCTTTGGAACGCTGAGGATTGGGCCACAAGGGGTGGGCTTGTGAAAACGGATTGGAGCAAGGCCCCATTCACAGCCTCATACAGAAACTTCAATGCCCTAACCTCTTCCTCCACTGGCCAATCACTGGACGCCACGGGGCTGGCCAAGATCCATTGGGTGCAAAAGAATTACATGATTTACAACTATTGCACTGATATTAGACGTTTCCCACAAGGCCTCCCTCCAGAATGTTCCATTGCTTGA 801 0.4657 MMKNIGLFLLVVVATFVVAATAGSFYQDFEITWGGERAKIYENGNLLTLSLDRASGSGFRSKKEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWNAEDWATRGGLVKTDWSKAPFTASYRNFNALTSSSTGQSLDATGLAKIHWVQKNYMIYNYCTDIRRFPQGLPPECSIA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00568 266 Gene3D - 10 265 - -
Gma09g00568 266 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Gma09g00568 266 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Gma09g00568 266 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Gma09g00568 266 Pfam Glycosyl hydrolases family 16 26 206 IPR000757 GO:0004553|GO:0005975
Gma09g00568 266 CDD GH16_XET 23 263 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma09g00568 266 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 265 - -
Gma09g00568 266 PIRSF EndGlu_transf 218 266 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma09g00568 266 PIRSF EndGlu_transf 1 229 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma09g00568 266 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Gma09g00568 266 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 265 IPR013320 -
Gma09g00568 266 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 223 263 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma09g00568 266 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 265 IPR044791 GO:0004553
Gma09g00568 266 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00568 Gma-Chr9 6087664 6090430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00568 2 266 Glycoside Hydrolase AT4G25810 67.254 2.61e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00568 K14504 K08235 gmx:100778237 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01577 15 15306334 15308602 Gma09g00568 09 6087664 6090430 GST
Gma13g00832 13 22612312 22613652 Gma09g00568 09 6087664 6090430 PCT
Gma09g00568 09 6087664 6090430 Gma13g00832 13 22612312 22613652 PCT