Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02022 ATGCAGCTGCACATATCTCCAAGTTTGAGGCATGTTACTGTGTTTCCAAGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCGAGGCGTGTCTCGTACCGGATGCTCTTCTATTCGCTCTTGTTCTTCACTTTTCTTCTCCGGTTTGTGTTTGTTTTAACAGCAGTGGATGGCATTGATGGAGAAAACAAATGCACTACCATAGGTTGCCTAGGGAAAAAACTAGGACCAAGGATTTTGGGAAGACGGCCTGAATCAACTGTCCTAGAAGTGATATACCAAACATTAGATGAACCTGTTGGTAAAAATGAACTTCAGGGAAGATCTGATATTCCACAGACCTTAGAAGAGTTCATGACTGAAATGAAGAAAGGTGGATATGATGCCAAGACATTTGCAGTTAAACTTCGAGAAATGGTAACCCTTATGGAGCAAAGGACCAGGATGGCCAAAATCCAAGAATATCTATATCGACATGTAGCATCAAGCAGCATACCAAAACAACTTCACTGCCTTTCCTTGACTTTGGCCAATGAACACACCAACAACGCAGCGGCACGCCTTCAGCTCCCCTCTGCAGAACTAGTCCCTGCTCTGGTTGACAATTCCTACTTCCACTTTGTCCTTGCCTCAGACAATGTGTTGGCTGCATCAGTGGTTGCAGCATCGCTTGTTCGCAACTTTTTGAGACCTCAGAAGGTTGTTCTGCATATAATTACAGACAAGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTACCTGTTTTGGAAGCTATGGAGAAAGATCAAAAGGTGAGGTCACAATTTAGAGGGGGGTCATCAGCTATAGTTGCAAATACCACTGAGAAGCCAAAAGTAATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTGTTTCCAAGTATTAACAAGGTGGTCTTCCTTGATGATGACATCGTGGTACAAACTGATCTTTCACCTTTGTGGGACATTGAAATGAATGGAAAAGTAAATGGAGCTGTAGAAACATGCAATGGAGAAGATAAGTTTGTGATGTCAAAGAGGCTGAAGAGCTATTTGAACTTCTCCCACCCTCTAATATCCAAAATTTTTAATCCCAACGAATGTGCCTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATGTTTACCATTATTGGGTTGAACAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTTATGTCCACGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGTTAGAAATAGCTTTTCCACAACTAAGGAAATTGTGGACAAAGTATGTTGACTTCTCAGATAAGTTCATCAAGAGTTGTCACATTAGGGCATCATAG 1602 0.4207 MQLHISPSLRHVTVFPSKGFKEFIKVKVASRRVSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCTTIGCLGKKLGPRILGRRPESTVLEVIYQTLDEPVGKNELQGRSDIPQTLEEFMTEMKKGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLSLTLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVAASLVRNFLRPQKVVLHIITDKKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSINKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCNGEDKFVMSKRLKSYLNFSHPLISKIFNPNECAWAYGMNIFDLEAWRKTNISNVYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGYVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLEIAFPQLRKLWTKYVDFSDKFIKSCHIRAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02022 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Gma12g02022 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Gma12g02022 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Gma12g02022 533 CDD GT8_like_1 207 519 - -
Gma12g02022 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
Gma12g02022 533 Pfam Glycosyl transferase family 8 206 506 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02022 Gma-Chr12 40891226 40894526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02022 1 533 Glycosyltransferase AT5G54690 78.692 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02022 K20867 - gmx:100812550 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02022 12 40891226 40894526 Gma12g02022 12 40891226 40894526 ECH
Gma12g02022 12 40891226 40894526 Gma12g01228 12 16177629 16180450 PCT
Gma12g02022 12 40891226 40894526 Gma06g02459 06 46932128 46935043 PCT
Gma12g01228 12 16177629 16180450 Gma12g02022 12 40891226 40894526 PCT
Gma06g02459 06 46932128 46935043 Gma12g02022 12 40891226 40894526 PCT