Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01228 ATGTTGCTGCAGATATCTCCGAGTTTGAGGCATGTCACCGTGCTTCCGGGAAAAGGGTTGAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGAAGCTTTCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACATTCCTTCTTAGGTTTGTGTTTGTCTTGACAGCTGTGGATAACATTGATGGAGAAAACAAGTGCTCTTCCTTAGGTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGAAGAAGTCTAGAATCAAATGTCCCAGAAGTGATATACGGAATATTAGATCAACCCCTTGGCAAAGATGAACTAGAGGGAAGGTCTGATATACCTCAGACATTAGAAGAGTTCATGACCCAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAACCCTTATGGAACAAAGAACAAGGGAAGCAATAGTTCAAGAATATTTATATCGTCATGTAGCCTCAAGCGGCATACCCAAACAGCTTCACTGCCTTGCCTTAAGGCTGGCCAACGAGCACACCAACAATGCCGCGGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCCTGGTTGACAACAACTACTTTCACTTTGTCCTGGCCTCAGACAATGTTCTTGCCGCCTCTGTGGTTGCAACATCGCTTGTTCGCAACAGTTTGCGACCTCAGAGGGTTGTTCTGCACATAATTACAGATAGAAAGACTTACTACCCCATGCAGGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGTTTACAAAAGGGAAGGTGCCTGTGCTTGAAGCAATGGAAAAAGATCAAAATGTTCGATCACATTTTAGAGGGGGGTCATCAGCTATCGTTGCAAATACTACTGAGAAGCCGAAAGTAATTGCTGCAAAGCTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTAAATGGAAAAGTTAATGGAGCAGTAGAAACATGCAGTGGAGAAGATAAGTTGGTGATGTCAAAGAGGTTGACAAGCTATTTGAACTTCTCCCACCCTTTAATATCCCAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTTGATGCTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACATGTTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGACTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAAGCCATTGTGGACCAAGTACATTGACTTTTCAGATTACTTCATAAAGAGTTGTCACATTAGGGCATTGTAA 1602 0.4276 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRKLSYRMLFYSLLFFTFLLRFVFVLTAVDNIDGENKCSSLGCLGKKLRPKILGRSLESNVPEVIYGILDQPLGKDELEGRSDIPQTLEEFMTQMKEGGYDAKTFAIKLREMVTLMEQRTREAIVQEYLYRHVASSGIPKQLHCLALRLANEHTNNAAARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVATSLVRNSLRPQRVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSHFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFSSLNKVVFLDDDTVVQTDLSPLWDIDLNGKVNGAVETCSGEDKLVMSKRLTSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHHWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQENTSFADAETAGVIHFNGRAKPWLDIAFPHLKPLWTKYIDFSDYFIKSCHIRAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01228 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Gma12g01228 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 524 IPR029044 -
Gma12g01228 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Gma12g01228 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Gma12g01228 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Gma12g01228 533 CDD GT8_like_1 207 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01228 Gma-Chr12 16177629 16180450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01228 1 532 Glycosyltransferase AT5G54690 79.588 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01228 K20867 - gmx:100783157 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01228 12 16177629 16180450 Gma12g01228 12 16177629 16180450 ECH
Gma12g01228 12 16177629 16180450 Gma06g02459 06 46932128 46935043 GST
Gma12g02022 12 40891226 40894526 Gma12g01228 12 16177629 16180450 PCT
Gma12g01228 12 16177629 16180450 Gma12g02022 12 40891226 40894526 PCT