Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02020 ATGGAGTCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCTCCCGCGAACAGTTCAAGCTCCAAGGCCGCACCGTTCACCTCTCCAATTTAGATATCGATGGAGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTCGCCACCGCCAAAGTCGGCAAGCTAGAGATTACACTTCCGTCGGTGAGCAATGTGCAAACGGAGCCAATCGTGGTGCATATTGATAGACTCGATCTGGTTCTCGAGGAGAATTCTGATTCTGATGAATCTCTTAGTTCGAACTGCTCCACGCCGTCGGCTGCCTCCGCCAAGGGAAGTGGTTATGGTTTCGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTTTTACTTGAAACTCGTGGTGGTTCTCGTCGCCAAGCGGGAGCAACATGGGCTCCACCTATGGCATCTATCACCATACGCAACCTTTTGTTGTATACTACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTCACAAGAAGTATATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTCTTACCTCATCCCGACATGTTCACAGAGGCTGCATTTGGCCACTCTCAAGGGGAATCAAACTTTAGGGATGATGATGGCGCAAAGCGTGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAGTATCAGGAGAAGCATATATCACAATTCAGAGAACTGAGTTGAATAGTCCACTTGGGCTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCAGTAAGCGAACCAGGATTACGTGCACTTCTCCGCTTTATGACAGGAGTATATGTTTGTCTAAACAGGGGTGATCTTGATTCCAAGATTCATCAGCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCGTAGATCATATATTTCTTTGTATTAAAGATACTGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTGCTTTTCTCGGGCCAGTCTCTCTGAAGGAGATAATGATAATAACTTGACCAGAATTACAATTGGTGGCTTATTTTTAAGGGACACCTTCTGTAGCCCTCCATGTATCTTAGTGCAACCATCAATGCAAGTTGTCACAAGAGATGCTTTCCATGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTGCAAGAACAGGAGTGGCAATTGATCGAGGGAACCCCTCTAATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTGTGATTCATCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGATGGAATTGTTGTCAATCCTGGTGACATTTTACCAGATTTCTCAGTGAAATCTTTTATTTTCAATCTAAAAGGACTGGATCTTACAGTTCCTTTTGACAAGACCAAATTGGATATTTCCAAAAGTGACATGGACAATACAGTCCAGACCTCCTTTGCTGGAGCAAGGCTTCATATTGAAAGCCTTTGTTTTTTAAATTCACCCTCACTGAAACTAAGAATTCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCCCAGCTTACTTTATCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTAAACAGACATCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAGTCCATTGTTACAAGTTCCCCCTCCGGGGGGTATTGTTAGGGTTGGAGTTGCTTGCGAACAGTATCTGTCCAACACTTCTGTTGAACAATTGTTTTTCGTCCTGGATCTATATGGTTATTTTGGGAGAGTTAGTGAAAAGATAGCAAAGGCCGTAAAAAGGAAACAATTGGAGGACATTAGGGACAAATCTTTTAGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTGCTGTGAGTTTATCAGTGAAAAACCTCCAACTTCGATTTCTGGAGTCATCTTCTGTGAATATTGAGGGGATGCCTTTAGTGCAATTTGTTGGAGATGATCTGTTTACTAGTGCCACTCACAGAACCCTTGGTGGGGCTATTATTGTTTCATCTTTTTTACGTTGGGGGAGTGTTGTGATAGGTTGTGTAGATGATGAGGGGCACTTGCCGTGTGAAAATGGCTCATTCTTGAGTTCTAAGGAAAATGCTCTCTCATTGAGTGATAATGGATATCCTCAACTAAGAACTGTTTTCTGGGTGCATAAGAACGAGAAACATCTATTGAATGGAAATGCTTATTCAGTCCCTTTTCTGGACATAAGCATGGAGCATGTCATACCATTATATGAACAAGACTTGGAGTCTCATAGTTTGAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGCTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGGCCTGATGGAGCTCCTGGGACGGGTCTTTGTAAAGGGTTGGAAAACTTACAAAAAGGACCATTGTCAAAACTTTTTAAGGCAACTCCTCTCATTGTTGATAATTCAGAAGATGTTGGAAGTATGAGAGAAGGGAAAGAAATCAGTTTTCCTCAATTGAAGAAGCCTGATGATGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGAGACAGCTGAAAGATGGTGGTTCTCAAGCCATGTAGATGAAGGCAGAGAAGAGAGGAGTTGGCATGCATCTTTCCATGGTTTGCGAGTAAATGCAAAAAGTAGCCCAACGGATGTTCCAGGTGGAAAAGGACAATTGCGAAGAATAAAACAACATCCAGTAGAATTGATTACAGTTGGAATTCAAGGTCTGCAAATCTTGAAGCCACATTTGCAAAAAGACATTCCTTCATCAACGCTAATTGCAAATGGGGGTAAAGGATTCACCAACACAGTTGGAGGAATTGGTGTTGAAGTTCGCTTGATATTAGGTGGGGAGAATGTCGATGATGAAATGGTCAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATTGAGGCAGTTGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAATTATACGGTTGCTGAAGTTAGAAGGTTCTGTTGGTCAGTCTGTAATAGACCAACTCGGCCACCTAGGAAGTGAAGGCATTGATAAGATTTTCTCTTCTGAAAAGTACAGTAGAGACGGAAGTGTTGGTAGTAGAGGACTTTCTCCATTGCCAAATCTCATCATAAATGAGGAATCACACAAAACTTCAGAACAAACATTGACTTTGCTTGAGGAAGCACTTACGGATTCACAGGCTAAACTTAATGATTTAATCAGTGATATTGGTACTTCAGAGTCTTCCTCTCAACACCTTACCATCGTCCAACTCAGTCAAAATATAGAGACTATGCACGACTTGTTGATGCAATTACGGAATCAAATTTGA 3651 0.4273 MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEENSDSDESLSSNCSTPSAASAKGSGYGFADKIADGMTIQIQTVNLLLETRGGSRRQAGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSHKKYIYVFKKLEWQSLSIDLLPHPDMFTEAAFGHSQGESNFRDDDGAKRVFFGGERFIEGVSGEAYITIQRTELNSPLGLEVQLHINEAVCPAVSEPGLRALLRFMTGVYVCLNRGDLDSKIHQRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLCFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQVVTRDAFHVPEFARSFCPPIYPLQEQEWQLIEGTPLICLHALKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSLLADGIVVNPGDILPDFSVKSFIFNLKGLDLTVPFDKTKLDISKSDMDNTVQTSFAGARLHIESLCFLNSPSLKLRILNLEKDPACFSLWEGQPIDASQEKWTARASQLTLSLEACTDRTGCQNSLKQTSGLWRCVDLKDACIEVAMATADGSPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFGRVSEKIAKAVKRKQLEDIRDKSFSGKLMDKVPSDAAVSLSVKNLQLRFLESSSVNIEGMPLVQFVGDDLFTSATHRTLGGAIIVSSFLRWGSVVIGCVDDEGHLPCENGSFLSSKENALSLSDNGYPQLRTVFWVHKNEKHLLNGNAYSVPFLDISMEHVIPLYEQDLESHSLNVSASVSGVRLAGGMNYAEALLHRFGILGPDGAPGTGLCKGLENLQKGPLSKLFKATPLIVDNSEDVGSMREGKEISFPQLKKPDDVDVTIELRDWLFALEDAQETAERWWFSSHVDEGREERSWHASFHGLRVNAKSSPTDVPGGKGQLRRIKQHPVELITVGIQGLQILKPHLQKDIPSSTLIANGGKGFTNTVGGIGVEVRLILGGENVDDEMVNWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKYSRDGSVGSRGLSPLPNLIINEESHKTSEQTLTLLEEALTDSQAKLNDLISDIGTSESSSQHLTIVQLSQNIETMHDLLMQLRNQI 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02020 1216 Coils Coil 1162 1182 - -
Gma12g02020 1216 Coils Coil 1195 1215 - -
Gma12g02020 1216 Pfam N-terminal region of Chorein or VPS13 1 99 IPR026854 -
Gma12g02020 1216 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1215 - -
Gma12g02020 1216 PANTHER UNCHARACTERIZED 1 1215 IPR026728 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02020 Gma-Chr12 40845976 40854058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02020 - - gmx:100811661 2374.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02020 12 40845976 40854058 Gma12g02020 12 40845976 40854058 ECH
Gma13g02537 13 40246132 40254123 Gma12g02020 12 40845976 40854058 GST
Gma12g02020 12 40845976 40854058 Gma12g01225 12 16110803 16133850 PCT
Gma12g01225 12 16110803 16133850 Gma12g02020 12 40845976 40854058 PCT