Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01225 ATGGAGTCGATCCTGGGAAGGGCTCTGGAGTACACTCTCAAGCACTGGCTCAAATCGTTCTCAAGAGACCAGTTCAAGCTGCAGGGTCGCACCGTTCAGCTTTACAATCTAGATTTGAACGGGGATGTACTGCATTCCAGCGTTGGATTCCCGCCCGCGCTCAATGTCACCGCTGCCAAAGTTGGCAAATTGGAGATCACGCTTCCGTCCGTGAGCAATGTACAGATAGAGCCAATCATTGTGCAAATTGATAGGCTCAATTTGGTTCTTGAGGAGAATTTTGATTTTGAGCCATCTGAAACTCAACCCAGTTGTTCCCCATCAAGTGCCACCACAAAGGGTAGCGGCTATGGTTTTGCTGATAAGATTGCAGATGGAATGACTATACAAATTGATACTGTTAATCTATTACTTGAAACTCGTGGAAGTGCTAGTCGCCAAGGGGGAGCAACATGGACACCACCTATGGCATCTATCACCATACACAACCTTTTACTGTATACCACAAATGAAAGCTGGGAGGTTGTGAATCTTAAAGAGGCACGGGAATTCTCCAGTAATAAGAAGTATATATACGTCTTCAAAAAACTAGAATGGGAATCTTTGTCTATTGATCTTTTGCCTCATCCTGACATGTTCACGGATGCTACTTTAGGCCGCTCTCAAGAGGGAGCAAACCTGAGAGACGAGGATGGTGCAAAGCGGGTATTGTTTGGAGGTGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATAACGATACAGAGAACTGAATTGAACAGTCCATTTGGGCTTGAGGTTCAGTTACATGTCACAGAAGCTGTTTGCCCCGCTTTAAGTGAACCAGGACTGCGTGCGCTTCTCCGCTTTATAACAGGATTATATGTCTGTCTAAATAGGGGAAATGTGGATTTCAAGGCTCAGCAGCGATCAACTGAAGCTGCTGGGCGTTCTCTTGTCTCAATTGTTGTGGACCACATATTTCTTTGCATTAAAGACGCTGAGTTCCAGCTTGAGCTTTTAATGCAGTCCCTCTATTTTTCTCGGGCCAGTCTTTCGGAAGGAGATAGTGACAGTAACCTGACCAGAATTACAGTTGCAGGACTATTTTTAAGGGACACCTTTTCATTTCCTCCATCTACCTTAGTGCAACCATCAATGCAATCTGTTACCGGAGATGCTTTCCAAGTGCCAGCATTTGCTAGAAGTTTTTGCCCTCCAATATATCCTCTAGGAGAACAGCAATGGCTATCAATTGTGGGAACTCCTCTGATATGCCTCCATTCCATTCAGATCGTGCCGTCTCCACTTCCACCATCCTTTGCTTCTCAAACTGTTATTGATTGTCAACCTCTTATGATTCACCTGCAGGAAGAATCCTGCCTGACGATATCATCATTCTTAGCTGATGGTATTGTTGTCAATCCTGGTGACATTTTACCAGATTTCTCAGTAAAATCTTTTATTTTCACTCTCAAGGGGCTGGATCTAACAGTTCCCTTGGATAAGACCCAACTGGATAATTCTGAAACCAATATGGACAATAAAATCAAGACTTCCTTTGCTGGAGCAAGGCTTCAAATTGAAAATCTTTTCTTTTTAGATTCACCCTCATTGAAACTGAAAATACTGAACCTCGAGAAGGATCCTGCTTGCTTCTGTCTTTGGGAGGATCAACCTATTGATGCTAGTCAGAAGAAGTGGACTGCTGGAGTATCCCAGCTTACTTTATCTCTGGAAGCAAGTACTGGCAAGCTTGGTCATCAGAATTCTCTTGGATGGACTGCTGGATTGTGGAGGTGTGTTAATCTAAGAGATGCTAGCATAGAAGTAGCTATGGTAACTGCTGATGGAAATCCATTGTTAAAGGTTCCTCCTCCAGGGGGTATTGTGAGGGTTGGTATTGCTTGTGAACAGTATCTATCCAACACTTCAGTTGAACAGTTATTTTTTGTCCTGGATCTCTATGCTTATTTTGGGAGAGTTAGTGAGAAAATAGCAATAGCTGGAAAAAAGAAACAATTGAAGGATGTCAGGAACAAATCTTTTAGTGGAAAGCTGATGGACAAGATACCAAGTGACACATCTGTAACTTTGACATTAAAAAATCTCCAACTTCAATTTCTTGAGCCATCTTCTGTGAATGCTGAGGGAATGCCTCTAGCACAGTTTGTCGGAGATGATCTGTCTTTTAGTGCCACTCACAGAACCCTAGGTGGTGCTATTGTTGTTTCATCCACTTTAAATTGGGAGAGAGTTGTGATAGATTGTGTGGATTCCAAGGAGCCCTTGGCATGTGAAAAGGACTCATATTTTAGTACCGGAGAAAATGTTCCCTCAATAAGTGATGTAGGATACCCAAAACTAAGACCTGTTTTCTGGGTGCATAACAAAAAAGAACTATTGAATGGAAATGCTCATTCATACCCATTTCTGGACATAAGTGTGGTGCATGTCGTACCATTTTGTATAGTAGACATGGAGTCACATACTTTGAATGTCTCAGCTGTTGTATCTGGTGTTCGTCTTGGCGGGGGAGTGAACTACTTTGAGGCCCTCCTGCATCGATTTGGAATACTAGGGCCTGATGGTGGTCCAGGGAAGTGTCTGTCTAAAGGGTTGGAAAACTTACAAACTGGACCATTGGCAAAACTTTTTAAGGCAACACCTCTGATTTCTGATAATTCAGAAAATGTTGAAACTGCAGGAGAAGGGAGAGATACCAGTTTTCCAAACTTGAAGAACCCAGATATTGTGGATGTAACTATAGAGTTGAAAGACTGGTTATTTGCTCTCGAAGGTGCTCAAGAGATGGCTGAAAGATGGTGGTTCTCAGTCCATGAAGATGTAAAAAGAGAAGAGAGGTATTGGCACACAACTTTCCATACCTTGCGAGTAAATGCAAAAAGTTGCCCAAAGAATATTCCAGACAGAAAATCACAATCACGCAGAATACAACCATATCCGGTGGAACTGGTTACGGTTGGAGTTCAAGGGCTGCAGATCATGAAGCCCCACACCCAAAAGGACATTCCTATGTCACTGATAACTGTAAACGGAGTTAAAGAATTCACTGAAAAAATTGGGGGAACTGATCTTGAAGTAAGCTTGATACTATCTGAGGATAATGAACATGAATTGGTTAATTGGGAAGTCGAAAACCTAAAGTTTTTTATAAGGCAACCGAATGAGGCAGTTGTAACCAAGGAAGAGGTCCAACACCTCACTTTTCTGTGCAAATCTGAAATTGATTCTGCTGGCCGGATAACAGCTGGAGTTCTACGGCTATTTAAGCTAGAAGGCTCTGTTGGCCAGTCTGCAATTGATCAGCTTGGCAACCTAGGAAGTGAAGGCATTAACAAGATTTTTTCTCCTGAGAAGCATAGCTTAGATGGTAGTGTTTGTAGCTGTGGAGGATTCTCTCCATTACAAAACCTGACAAATGAAAGTCCAAGCAAAACTATGGAACCAACATTAGCTTTGCTTGAGGAAGCAGTTGCTGATTCAAAGGCTAAGATTAATTCTTTGATGACTGATATTGGTACTTCCGAGTCTTCCTTCCAGCACCTTACTGTTGTCAAAGACCTCAGTCAAAAGATTGAGTCGTTGCAGGGTTTAGTGCTGCAATTGCGGGAGCAACTTTAA 3648 0.4249 MESILGRALEYTLKHWLKSFSRDQFKLQGRTVQLYNLDLNGDVLHSSVGFPPALNVTAAKVGKLEITLPSVSNVQIEPIIVQIDRLNLVLEENFDFEPSETQPSCSPSSATTKGSGYGFADKIADGMTIQIDTVNLLLETRGSASRQGGATWTPPMASITIHNLLLYTTNESWEVVNLKEAREFSSNKKYIYVFKKLEWESLSIDLLPHPDMFTDATLGRSQEGANLRDEDGAKRVLFGGERFIEGISGEAYITIQRTELNSPFGLEVQLHVTEAVCPALSEPGLRALLRFITGLYVCLNRGNVDFKAQQRSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLYFSRASLSEGDSDSNLTRITVAGLFLRDTFSFPPSTLVQPSMQSVTGDAFQVPAFARSFCPPIYPLGEQQWLSIVGTPLICLHSIQIVPSPLPPSFASQTVIDCQPLMIHLQEESCLTISSFLADGIVVNPGDILPDFSVKSFIFTLKGLDLTVPLDKTQLDNSETNMDNKIKTSFAGARLQIENLFFLDSPSLKLKILNLEKDPACFCLWEDQPIDASQKKWTAGVSQLTLSLEASTGKLGHQNSLGWTAGLWRCVNLRDASIEVAMVTADGNPLLKVPPPGGIVRVGIACEQYLSNTSVEQLFFVLDLYAYFGRVSEKIAIAGKKKQLKDVRNKSFSGKLMDKIPSDTSVTLTLKNLQLQFLEPSSVNAEGMPLAQFVGDDLSFSATHRTLGGAIVVSSTLNWERVVIDCVDSKEPLACEKDSYFSTGENVPSISDVGYPKLRPVFWVHNKKELLNGNAHSYPFLDISVVHVVPFCIVDMESHTLNVSAVVSGVRLGGGVNYFEALLHRFGILGPDGGPGKCLSKGLENLQTGPLAKLFKATPLISDNSENVETAGEGRDTSFPNLKNPDIVDVTIELKDWLFALEGAQEMAERWWFSVHEDVKREERYWHTTFHTLRVNAKSCPKNIPDRKSQSRRIQPYPVELVTVGVQGLQIMKPHTQKDIPMSLITVNGVKEFTEKIGGTDLEVSLILSEDNEHELVNWEVENLKFFIRQPNEAVVTKEEVQHLTFLCKSEIDSAGRITAGVLRLFKLEGSVGQSAIDQLGNLGSEGINKIFSPEKHSLDGSVCSCGGFSPLQNLTNESPSKTMEPTLALLEEAVADSKAKINSLMTDIGTSESSFQHLTVVKDLSQKIESLQGLVLQLREQL 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01225 1215 Coils Coil 1160 1180 - -
Gma12g01225 1215 Coils Coil 1194 1214 - -
Gma12g01225 1215 PANTHER UNCHARACTERIZED 1 1214 IPR026728 -
Gma12g01225 1215 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1214 - -
Gma12g01225 1215 Pfam N-terminal region of Chorein or VPS13 1 100 IPR026854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01225 Gma-Chr12 16110803 16133850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01225 - - gmx:100782617 2167.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01225 12 16110803 16133850 Gma12g01225 12 16110803 16133850 ECH
Gma13g02537 13 40246132 40254123 Gma12g01225 12 16110803 16133850 PCT
Gma12g02020 12 40845976 40854058 Gma12g01225 12 16110803 16133850 PCT
Gma12g01225 12 16110803 16133850 Gma13g02537 13 40246132 40254123 PCT
Gma12g01225 12 16110803 16133850 Gma12g02020 12 40845976 40854058 PCT