Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01890 ATGGCTGCTCTCACTTCTCTATCTTTCTCAGCAGTGACTCATTGCTCAGAAAGAAAAGTGACCCTTTCCTCCACTCGCTTTCTGGCTTCCTCCTCAGAGATATTTGGGTTCCGAACCGATTTCTCGTACCACTATGTTGGTGTTCGAGCTTCCAATTCCCCATCTAAAATGGTTGTTCAATGCATGTCTTCTGCTACAGATGTTCCTCCCACTGTTTCTGAGACAAAGTTAAATTTCCTCAAGGCATATAAGCGACCAATCCCTAGTATTTACAACACTGTGCTGCAGGAGCTAATAGTGCAGCAACATTTAATGAAATACAAGAGATCATACCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTATATATGATAAACTTATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATTAAGGCATTGAAGGAAGATCCAGAACAATACAGAATAGACGCACGAAAGTTGGAAGAGTGGGCTCGAGTTCAAAAGCCAACTTCCCTTGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGAATTTTAAAGGACATTGCAGAAAGAGCTGGAGGAAAAGGAGAATTCAGTTATAGTCGTTTTTTTGCAGTTGGACTGTTTCGTCTTCTGGAGTTGGCAAATGCCACGGAACCAACGATTTTGGACAAGCTTTGTGTGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGCATCCTGCTTTCAAAGTTGGTTCAAGCAAAAGAGCTGCTGAAGGAGTATATTGACAGGGAGAAAAAGAAAAGGGATGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATCACAACATGTTTGGGACAACAATTGCCTGGATTTGAATCATCTAAAGTGCAGAGTACATTTCAAAGGATAAAATATACTAAAAATAAAAATTGTTATCAATGA 960 0.4135 MAALTSLSFSAVTHCSERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSKMVVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVEFSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNINKRSVDRDLDVYRILLSKLVQAKELLKEYIDREKKKRDERAEPQKANEAITTCLGQQLPGFESSKVQSTFQRIKYTKNKNCYQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01890 319 Coils Coil 255 275 - -
Gma12g01890 319 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
Gma12g01890 319 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 70 273 IPR017499 GO:0010207|GO:0015979
Gma12g01890 319 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 288 - -
Gma12g01890 319 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 288 IPR017499 GO:0010207|GO:0015979
Gma12g01890 319 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01890 Gma-Chr12 39561447 39564730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01890 - - gmx:100814341 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01890 12 39561447 39564730 Gma12g01890 12 39561447 39564730 ECH
Gma13g02669 13 41410193 41413878 Gma12g01890 12 39561447 39564730 GST
Gma12g01890 12 39561447 39564730 Gma12g00951 12 9897388 9901160 PCT
Gma12g01890 12 39561447 39564730 Gma06g02667 06 50240382 50244443 PCT
Gma12g00951 12 9897388 9901160 Gma12g01890 12 39561447 39564730 PCT
Gma06g02667 06 50240382 50244443 Gma12g01890 12 39561447 39564730 PCT