Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00951 ATGGCTACTGTTATTTCTTCTTTCTCTTTCTCCACTCTCACTCAATCTTCTTCGCAGAGGAACCTCACCACACTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTGGTTTCTCCTGCCTCAATGTTGGAGTTCGAGCTTCCAATTCCGCTTCCAAAATGGTCGTTCGTTGCTCCTCTTCCGTCGCAGAACCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACCGTGCTGCAGGAGCTCATTGTCCAGCAACATTTAATGAGATACAAGAGATCGTATCGCTATGACGCTGTATTTGCCCTTGGCTTCGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAAAGAAGATCCTGAACAATACAGAGTAGATGCAAAGAAATTAGAAGAGTGGGCTCGGTCTCAAAACCCAAATTCGCTATTAGAATTTTCATCTAGAGAAGGAGAAGTTGAGGGTATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGACTTCAGTTATAGCCGTTTCTTTGCAATAGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCGGTTTTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGATGTGTATCGTAACTTGCTTTCCAAATTGGTTCAAGCTAAAGAGCTTCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGTCTAATGAGGCCATTACACAACAACAACAGTTTTCTAGCCTTTAG 876 0.4269 MATVISSFSFSTLTQSSSQRNLTTLSSNSPTFRFRVGFSCLNVGVRASNSASKMVVRCSSSVAEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKSNEAITQQQQFSSL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00951 291 Coils Coil 244 274 - -
Gma12g00951 291 MobiDBLite consensus disorder prediction 265 291 - -
Gma12g00951 291 Pfam Thylakoid formation protein 67 272 IPR017499 GO:0010207|GO:0015979
Gma12g00951 291 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 4 283 IPR017499 GO:0010207|GO:0015979
Gma12g00951 291 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 63 269 IPR017499 GO:0010207|GO:0015979
Gma12g00951 291 Hamap Protein Thf1 [thf1]. 62 270 IPR017499 GO:0010207|GO:0015979
Gma12g00951 291 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 4 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00951 Gma-Chr12 9897388 9901160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00951 - - gmx:100792508 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00951 12 9897388 9901160 Gma12g00951 12 9897388 9901160 ECH
Gma12g00951 12 9897388 9901160 Gma06g02667 06 50240382 50244443 GST
Gma13g02669 13 41410193 41413878 Gma12g00951 12 9897388 9901160 PCT
Gma12g01890 12 39561447 39564730 Gma12g00951 12 9897388 9901160 PCT
Gma12g00951 12 9897388 9901160 Gma13g02669 13 41410193 41413878 PCT
Gma12g00951 12 9897388 9901160 Gma12g01890 12 39561447 39564730 PCT