Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01218 ATGGCTTCTTCCACCATCACCTCCTCCTTCCTCACATCACACCCTTCATCCCTCTTCAACAAATCATCATCTTCATCATTCCCCTCCTTCCATGCCACCCCCACTCTCCGCCCCCACAGGCCACGCGCCTCCATGTCCGCGGCAGCGCCACCGCCGCCCTACGACTTCGGCTCGTTCCGGTTCGAGCCGATTAGGGAGTCGATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCGTCGTCGGCGCAGGCTCCGCGGGTCTCTCGTGCGCCTACGAGCTCTCCAAAAACCCCTCCGTCAATATCGCCATAGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCCAGGCCAAACGTGAAGCTCTTCAACGCCGTGGCGGCCGAGGACTTGATTGTGAAGAACGGGAGAGTTGGTGGGGTGGTGACAAACTGGGCCTTGGTTTCAATGAACCATGACACTCAATCCTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGCCATGATGGACCCTTTGGCGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTGCCAGGGATGAAAGCCCTTGACATGAACAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGGTCCAACATTTGGAGCAATGATGATTTCAGGGCAGAAAGCAGCCCATCTGGCTTTGAGATCATTGGGACTTCCCAATGCTTTGGATTCTGTAGGAAACGTTCATCCTGAGCTTGTCCTAGCTGCTGCTGAATCTGCTGAAATTGCAGACGCTTAA 1053 0.5594 MASSTITSSFLTSHPSSLFNKSSSSSFPSFHATPTLRPHRPRASMSAAAPPPPYDFGSFRFEPIRESIVSREMTRRYMTDMVTHADTDVVVVGAGSAGLSCAYELSKNPSVNIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDSVPGMKALDMNKAEDAIVKLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRSLGLPNALDSVGNVHPELVLAAAESAEIADA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01218 350 Gene3D - 55 85 - -
Gma12g01218 350 Pfam Thi4 family 70 303 - -
Gma12g01218 350 MobiDBLite consensus disorder prediction 1 32 - -
Gma12g01218 350 Gene3D - 86 321 IPR036188 -
Gma12g01218 350 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 66 320 IPR002922 -
Gma12g01218 350 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 3 330 IPR027495 GO:0009228
Gma12g01218 350 MobiDBLite consensus disorder prediction 1 50 - -
Gma12g01218 350 PANTHER THIAMINE THIAZOLE SYNTHASE 1 350 - -
Gma12g01218 350 SUPERFAMILY FAD/NAD(P)-binding domain 49 314 IPR036188 -
Gma12g01218 350 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01218 Gma-Chr12 15910246 15913617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01218 K03146 - gmx:547462 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02483 06 47301820 47305939 Gma12g01218 12 15910246 15913617 ECH
Gma12g01218 12 15910246 15913617 Gma12g01218 12 15910246 15913617 ECH