Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00895 ATGGCGACTCTTGATTCCGACGTGCCTATGGTTCCCGCCGGCGAGCCCTCGAGCAGCGCCGGTCCTTCTTCCAAGAAGCCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCTATCTGCCGGAACCACATCATGGATCTCTGCATCGAGTGCCAAGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTGGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATCAGTCGATGGCTCAAGACTCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG 351 0.5413 MATLDSDVPMVPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00895 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Gma12g00895 116 PANTHER RING BOX 1 116 - -
Gma12g00895 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Gma12g00895 116 SUPERFAMILY RING/U-box 28 113 - -
Gma12g00895 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Gma12g00895 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Gma12g00895 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Gma12g00895 116 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00895 Gma-Chr12 8900026 8902717 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00895 K03868 - gmx:100789570 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00895 12 8900026 8902717 Gma06g02707 06 50733525 50736712 GST
Gma13g02728 13 41849371 41851698 Gma12g00895 12 8900026 8902717 PCT
Gma12g01836 12 39054498 39056782 Gma12g00895 12 8900026 8902717 PCT
Gma12g00895 12 8900026 8902717 Gma13g02728 13 41849371 41851698 PCT
Gma12g00895 12 8900026 8902717 Gma12g01836 12 39054498 39056782 PCT