Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00819 ATGGCGCCAAGGAAACCTCGCGAGCGTGAAATGCTGCTCGAGTCCGTTATCGCGCTCATCTTCATCTTCGTCGCCTGCGTCGACCTCTGCGACGGCGCCACCGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGAGTCCCCTTCGGATCTCGACTCGCCAGCCTCAACCACCACGCCGCCTCGCTCCACTTCTCTCCACACGCCGATCTCTCTCGCACCGTCCTCCTCATACCACTTCGCGAACTCAACATGTCTTTTGTCAAAGAATATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAGTAATCATCAAGATGAGAGTAAAGAATTGCTGAAGAATGCATTGGATGAACTTGAACAAATACTTATACACGCCAACGTACCTTATCCTGTTTATTTTGCATTTGAGGATGATAACATTGATGCTGTGTTAACTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACGGCAACAACTGGCGGATACAAATTTGTTGTTTCAGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGTCAATACAATCTGCTGTTTGGGCTAACTTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGTGGCTTAGGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCGGAAAATGCCTTTATTAAGAAAATTCATGAAGATTTTTCAAGGGTTGCAGCAGAATTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATTAACATTTCCAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTTTCTGAACTCTCTACAGCACCTGAATTGCTAGGGAAGACTGGTGGTTTGGTTGATGGCAGGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATCTATGGACATCAAGGAAAGAACATTCAGATCTTTGCAGACAACAGTAACTTGGCTGTCAATCCTTCTTATGTTCAATCATGGTTAGATGTTTTGTCCCAAACGCCTCGAGTAGCTCCATTTTTGTCAAAAGGTGATCCTTTTGTAATGGCACTGAAAAAGGAATTAGAAGACCATACTGATGAGGTAAATCTACATAGAGATGTGCTTGATGGGATGTTCACTTTCTATGATTCAACCAGGGCAAAGCTGAACATATATCAGGTATTTGAAGTTATTTGCTTTGTACCTTGTTCTGTATACAAAGGTTAG 1584 0.4362 MAPRKPREREMLLESVIALIFIFVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDGMGSNHQDESKELLKNALDELEQILIHANVPYPVYFAFEDDNIDAVLTDIKKNDVTGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIHEDFSRVAAELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLGKTGGLVDGRHFVNEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVQSWLDVLSQTPRVAPFLSKGDPFVMALKKELEDHTDEVNLHRDVLDGMFTFYDSTRAKLNIYQVFEVICFVPCSVYKG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00819 527 CDD M28_nicalin_like 135 428 - -
Gma12g00819 527 PANTHER NICALIN 7 516 - -
Gma12g00819 527 SUPERFAMILY Zn-dependent exopeptidases 187 384 - -
Gma12g00819 527 Pfam Nicastrin 223 360 - -
Gma12g00819 527 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Gma12g00819 527 Gene3D Zn peptidases 119 416 - -
Gma12g00819 527 Coils Coil 473 493 - -
Gma12g00819 527 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Gma12g00819 527 PANTHER NICALIN 7 516 IPR016574 GO:0009966|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00819 Gma-Chr12 7637369 7645520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00819 5 516 EF-hand Containing Proteins AT3G44330 69.320 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00819 - - gmx:100778865 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00819 12 7637369 7645520 Gma12g00819 12 7637369 7645520 ECH
Gma12g00819 12 7637369 7645520 Gma11g01486 11 15672891 15681671 GST