Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01486 ATGGCGCCAAGGAAACCTCGCGAGCGTGAAATGCTGTTCGACTCCGTCATCGCGCTCGTCTTCATCCTCGTTGCCTGCGTCGACCTCTGCGACGGCGCCACCGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTCCCCTTCGGATCTCGACTCGCCAGCCTCAACCACCACGCCGCCTCGCTCCACTTCTCTCCGCACGCCGATCTCTCTCGCACCGTCCTCCTCATACCGCTTCGTGAACTCAACATGTCTTTTGTCAAAGAGTATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAGTAATCATCAAGATGAGAGTAAAGAACTGCTGAAGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACAGCAACAACTGGCGGATACAAATTTGTTGTTTCGGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCTTCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACGTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGTGGCTTAGGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTATCTAAGCCTCCAGAAAATGCCTTTATTAAGAAAATTCATGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATTAACATTTCCAATCCCCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATCTATGGACATCAAGGAAAGAACATTCAGATCTTTGCAGACAACAGTAACTTGGCTGTCAATCCTTCTTATGTTCGATCATGGTTAGATGTTTTGTCCCAAACGCCTCGAGTAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGATGGGATTGTCACTTTCTATGATTCAACCAGCACAAAGCTTAACATTTATCAGGTTGCTAGTGTCACATTTGACTTGCTGTTGCTACTAGTATTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAG 1689 0.4387 MAPRKPREREMLFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDGMGSNHQDESKELLKNVLDELEKILIHANLPYPVYFAFEDDNIDAVLTDIKKNDVTGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIHEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPEFLEKTGGLVDGRHFVNEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFFSKSDPFVMALKKELEDHTDDVNLHRDVLDGIVTFYDSTSTKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01486 562 CDD M28_nicalin_like 135 428 - -
Gma11g01486 562 PANTHER NICALIN 8 561 IPR016574 GO:0009966|GO:0016020
Gma11g01486 562 Pfam Nicastrin 223 360 - -
Gma11g01486 562 PIRSF Nicalin 3 557 IPR016574 GO:0009966|GO:0016020
Gma11g01486 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Gma11g01486 562 PANTHER NICALIN 8 561 - -
Gma11g01486 562 SUPERFAMILY Zn-dependent exopeptidases 187 386 - -
Gma11g01486 562 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Gma11g01486 562 Gene3D Zn peptidases 154 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01486 Gma-Chr11 15672891 15681671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01486 5 560 EF-hand Containing Proteins AT3G44330 72.093 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01486 - - gmx:100779713 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01486 11 15672891 15681671 Gma11g01486 11 15672891 15681671 ECH
Gma12g00819 12 7637369 7645520 Gma11g01486 11 15672891 15681671 GST