Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00759 ATGTTCCTGTTCCAGAAGGGTTCTCATCTCCATCGTCTCCTTCTGTCAAAGAAGTACTACTACCATTTTCCGCTTCCACGCAATGCGGTTACCATCGCCGATTCCGTCGAACACCCCTCAGACGCCACCATAGCCAAACTAGTCCTCGAATCAGACCCACGCACCGTCTCCGAAGCCCTAACCAAGCCCACAATCCAATGGACCCCAGACCTAGTAAACAAAGTCATGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCAATTCTTCAAACACCTAGACCGCCACCACCCTTCCTACACCCACTCCCCCTCCTCCTTCGACCACGCCGTCGACATCGCGGCCCGCATGCGCGACTTCAACTCCGCCTGGGCCCTCGTGGGCCGCATGCGCTCCCTCCGCCTCGGCCCGTCTCCCAAAACCCTCGCCATCCTCGCCGAGCGCTACGCCTCCAACGGTAAGCCCCACCGCGCCGTCCGAACTTTCCTCTCCATGGCCGAGCACGGCATCCGCCAAGATCTCCACTCCTTCAACACCCTCCTCGACATCCTCTGCAAATCGAAGCGCGTCGAAACCGCGCACAGCCTCCTCAAAACGCTCACATCGAGGTTCAGACCCGACACCGTTACCTATAACATACTTGCGAACGGTTATTGCTTGATCAAACGCACGCCGATGGCTCTTCGGGTTTTGAAGGAGATGGTGCAGCGTGGGATTGAGCCTACGATGGTCACGTATAACACCATGCTGAAAGGGTATTTTAGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTATTTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTTGTGACTTACACCACTGTGATTCACGGGTTCGGGGTGGCGGGTGATGTTAAGAAAGCAAAAAGGGTTTTTCATGAGATGGTGAAGGAGGGTGTGGTTCCTAATGTTGCTACTTACAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAGTGTGGAGAATGCAGTGGTGGTTTTCGAGGAGATGGCGAGGGAGGGTGTGTGTGTGCCGAATGTGGTTACTTATAATGTTGTTATACGAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCGTTGGGGTTTATGGAGAGGATGGGGGAGCATGGTTTGAGGGCTTGTGTTCAAACATATAATGTTGTGATTCGGTATTTTTGTGATGCCGGGGAGGTTGAGAAGGCTTTGGAGGTGTTTGGGAAGATGGGGGATGGGTCATGCTTGCCCAATTTGGACACTTATAATGTTTTGATTAGTGCGATGTTTGTCAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAGTTGTTGATGGACATGGTTGATAGAGGGTTCTTGCCGCGCAAGTTTACTTTTAATAGGGTGTTGAATGGACTTGTTATTACTGGCAATCAGGATTTTGCAAAGGAGATACTGAGAATGCAGAGCAGATACTCGAAGTTAAAGGAAGACAATCTACATGGTTCTGAACTATTGAAAGTATATTGTCTGTTCAATTGGAGAGCATGTCCCCATTCTGTAATTTTGACGAAGTTTCTGCATTCTGGGGAACTCTCTGGTGATGAACCCACCATTTCTGAAAATCTTGCATTAAAGGTCTCCTCATTCAGGCCAGAACAATGA 1647 0.5021 MFLFQKGSHLHRLLLSKKYYYHFPLPRNAVTIADSVEHPSDATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRYSKLKEDNLHGSELLKVYCLFNWRACPHSVILTKFLHSGELSGDEPTISENLALKVSSFRPEQ 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00759 548 Gene3D Tetratricopeptide repeat domain 202 305 IPR011990 GO:0005515
Gma12g00759 548 Gene3D Tetratricopeptide repeat domain 378 503 IPR011990 GO:0005515
Gma12g00759 548 Gene3D Tetratricopeptide repeat domain 54 201 IPR011990 GO:0005515
Gma12g00759 548 Coils Coil 472 492 - -
Gma12g00759 548 Gene3D Tetratricopeptide repeat domain 306 377 IPR011990 GO:0005515
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Gma12g00759 548 SUPERFAMILY HCP-like 137 270 - -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 386 418 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 350 380 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Gma12g00759 548 TIGRFAM PPR: pentatricopeptide repeat domain 176 198 IPR002885 -
Gma12g00759 548 PANTHER OS02G0679200 PROTEIN 29 490 - -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Gma12g00759 548 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 29 490 - -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Gma12g00759 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Gma12g00759 548 Pfam PPR repeat family 383 429 IPR002885 -
Gma12g00759 548 Pfam PPR repeat family 173 219 IPR002885 -
Gma12g00759 548 Pfam PPR repeat family 241 288 IPR002885 -
Gma12g00759 548 Pfam PPR repeat 345 375 IPR002885 -
Gma12g00759 548 Pfam PPR repeat 308 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00759 Gma-Chr12 6985887 6988572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00759 87 507 Glycosyltransferase AT1G05670 27.074 3.57e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00759 - - gmx:100808784 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00759 12 6985887 6988572 Gma11g01547 11 16506524 16509797 GST