Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01547 ATGTTCCTGTTCCAGAAGGCTTCCGCTTCTCATGTCCAGCTTCTGATTGGGTCAAAGAAGTACTTTCAGTTCCATCTTCCCCGTGACGCAGTTAACATTGCCGAGGCCTCAGACGCAACCATAGCCAAACTAGTCCTGGAATCAGACCCACGCACCCTCTCCGAAGCCCTAACCAAGCCCAGAATCCACTGGACCCCAGAGCTAGTAAACAAAACCCTTAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCTATTCTTCAAACACCTCGACCGCCACCTCCCTTCCTACACCCACTCCCCCTCCTCCTTCGACCACGCCGTCGACATCGCGGCCCGCATGCGCGACTTCAACTCCGCCTGGGCCCTCGTGGGCCGCATGCGCTCCCTCCGCCTCGGCCCGTCTCCCAAAACCCTCGCTATCCTCGCCGAGCGCTACGCCTCCATCGGCAAGCCCCACCGCGCCGTCCGCACCTTCCTCTCCATGCACGAGCACGGCCTCCACCAAGATCTCCACTCCTTCAACACCCTCCTTGACATCCTCTGCAAATCGAACCGCGTCGAAACCGCTCACGACCTCCTCAGAACTCTCAAATCTAGGTTCAGACCCGACACCGTTAGTTACAACATTCTCGCGAACGGTTATTGCTTGAAAAAACGCACGCCGATGGCGCTGCGGGTTTTGAAGGAGATGGTACAGCGTGGGATTGAGCCTACGATGGTCACGTATAACACCATGCTGAAGGGGTATTTTAGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTTGTGTCTTACACCACTGTGATTCACGGGTTTGGAGTGGCGGGTGaggttaagaaagcaaaaagggtttttgatgagatggtgaaggagggtgtggctcctaatgttgctacttacaatgctttgatTCAGGTTTTTTGTAAGAAGGATAGTGTTCAGAACGCAGTGGCGGTTTTTGAGGAGATGGTGAGGGAGGGGGTGTGTTCGCCGAATGTGGTTACTTTCAATGTTGTTATACGAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCGTTGGGGTTTATGGAGAGGATGGGGGAGCATGGTTTGAGGGCTAGTGTTCAGACTTATAATGTTGTGATTCGGTATTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGGTGTTTGGGAAGATGGGGGATGGGTTGTGTTTGCCGAATTTGGATACTTATAATGTTCTGATTAGTGCGATGTTTGTGAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAGTTGTTGATGGAGATGGTTGAGAGAGGCTTCTTGCCACGCAAGTTTACTTTTAATAGGGTGCTAAATGGACTTGTTATTACTGGCAATCAGGATTTTGCAAAGGATATACTCAGAATGCAGAGCAGGGAACTCTCTGGTGATGAACCCACCATTGCTGAAAATCAGGCCAGAACACTGAAACCTATTTGCCTGCTACAGCTTTGCCACATTGGGGCAATACTACATGATTGGATTCTCCCTGCTTATCATAAGAGTTCTGCAGACGAGCCAATGACATCCTCCTGCTTAGTTTTCACCCCCTTATATAAGGATACAGGGATGATGGAGCACGAAACACAATAA 1662 0.4868 MFLFQKASASHVQLLIGSKKYFQFHLPRDAVNIAEASDATIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGVAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRELSGDEPTIAENQARTLKPICLLQLCHIGAILHDWILPAYHKSSADEPMTSSCLVFTPLYKDTGMMEHETQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Gma11g01547 553 SUPERFAMILY HCP-like 134 266 - -
Gma11g01547 553 Pfam PPR repeat family 308 358 IPR002885 -
Gma11g01547 553 Pfam PPR repeat family 238 285 IPR002885 -
Gma11g01547 553 Pfam PPR repeat family 380 426 IPR002885 -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Gma11g01547 553 Gene3D Tetratricopeptide repeat domain 410 484 IPR011990 GO:0005515
Gma11g01547 553 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 32 482 - -
Gma11g01547 553 Gene3D Tetratricopeptide repeat domain 199 292 IPR011990 GO:0005515
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 452 IPR002885 -
Gma11g01547 553 PANTHER OS02G0679200 PROTEIN 32 482 - -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Gma11g01547 553 Pfam PPR repeat 173 199 IPR002885 -
Gma11g01547 553 Pfam PPR repeat 206 236 IPR002885 -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gma11g01547 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma11g01547 553 Gene3D Tetratricopeptide repeat domain 293 409 IPR011990 GO:0005515
Gma11g01547 553 Gene3D Tetratricopeptide repeat domain 49 198 IPR011990 GO:0005515
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 383 407 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 347 379 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 206 239 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Gma11g01547 553 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01547 Gma-Chr11 16506524 16509797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01547 134 490 Glycosyltransferase AT1G05670 29.444 3.30e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01547 - - gmx:100306721 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00759 12 6985887 6988572 Gma11g01547 11 16506524 16509797 GST