LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00727	ATGGCGTCAGCATTATCTTCTCTCTCTTCCACGTCTTCTTCACTGTTGCAGCACAGTTTCACCGGTAACTCGAAGGCTCCTATTACTCAATTCCCCAACAAAAGTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAGGGCTGGCTTTTTCAGAAATTACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGGTAAAAGAAGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAACTTCAAGCTTCAAGCAGTCTGTATCCTGTAGTCTTGTAATCATACCCCAGGCTCGGATGAGGAAGGATTCCTAA	642	0.4299	MASALSSLSSTSSSLLQHSFTGNSKAPITQFPNKSARFSVFAQKKAKKLRKIILKEDVTDVGKQGQLLDVRAGFFRNYLLPMGKAQLVTPQLLKEMKIEEERIEAEKRRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVDLPEIRETGEYIAELKLHPEVTARTSSFKQSVSCSLVIIPQARMRKDS	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00727	213	Hamap	50S ribosomal protein L9 [rplI].	50	197	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Gma12g00727	213	SUPERFAMILY	L9 N-domain-like	51	106	IPR009027	-
	Gma12g00727	213	Pfam	Ribosomal protein L9, N-terminal domain	51	96	IPR020070	-
	Gma12g00727	213	Pfam	Ribosomal protein L9, C-terminal domain	112	189	IPR020069	-
	Gma12g00727	213	Gene3D	-	51	110	IPR036935	-
	Gma12g00727	213	Gene3D	-	111	191	IPR036791	-
	Gma12g00727	213	TIGRFAM	L9: ribosomal protein bL9	51	188	IPR020594	GO:0003735\|GO:0005840\|GO:0006412
	Gma12g00727	213	PANTHER	50S RIBOSOMAL PROTEIN L9	1	190	IPR000244	GO:0003735\|GO:0005840\|GO:0006412
	Gma12g00727	213	PANTHER	50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC	1	190	-	-
	Gma12g00727	213	Coils	Coil	93	120	-	-
	Gma12g00727	213	SUPERFAMILY	Ribosomal protein L9 C-domain	106	189	IPR036791	-
	Gma12g00727	213	ProSitePatterns	Ribosomal protein L9 signature.	62	89	IPR020070	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00727	Gma-Chr12	6538314	6541351	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00727	K02939		-	gmx:100500390	312.383

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g00727	12	6538314	6541351	Gma12g00727	12	6538314	6541351	ECH
	Gma12g00727	12	6538314	6541351	Gma11g01578	11	16958805	16962116	GST