Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00606 ATGAATTCCGTCGAGTCATGCGGCGCTTCCGTACGCGAGATCCGATTCTTCTCCGCACTTCCAGATGATTCTGTCTCTGCAGCCGGAAATCAGATAACGAAAAATTCCAGATTTTCTGTTAATGTACCAAATGGGTGTAAGTCCAGTGAAGGGGAGGATGTAGAGAAAGTGAATAATAGCTTTGTTGAATTGGATACAAGGGAAGGAATGAATGATGGTTTTCCTAGAGCTGGACCAAATGATTCGCTTCTTCCTGGTCTTTTTGATGATGTTGCGCTGAATTGTCTTGCTTGGGCTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAAAGGTACAACTTGCTGATTAGGAGCGGGTATCTATCTGAGTTGAGGAAGAAGCTGGGGATTGTGGAGCTAGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGGTGGGAGGTATTTGACCCCAAGAAGAATAGATGGATAACATTACCTAAGATACCTTGTGATGAGTGTTTTAATCATGCAGACAAGGAGTCCTTGGCTGTGGGGAGTGAAATGCTGGTTTTTGGTCGGGAATTGATGGATTTTGCCATTTGGAAGTACAGCTTGATTTCTTGCAATTGGGTGAAGTGTAAGGAGATGAACCGTCCTCGCTGCTTGTTCGGATCTGGCAATCTTGGTTCAATTGCTATTGTTGCTGGTGGAAGTGATAAATATGGAAATGTTCTTGAATCGGCAGAGTTGTATGACTCAAATTCAGGTACATGGGAACTATTGCCAAACATGCATACACCACGTAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCTATGTGATTGGTGGCATGTCAAGTCCTATTGTTTCATTGACTTGTGGGGAGGAGTATGATCTTAAGACTAGAAATTGGCGGAAAATAGAGGGTATGTACCCATATGTTAATGGGGCTGCTCAGGCACCTCCACTTGTGGCAGTTGTGGATAACCAGTTGTATGCCGTTGAGCATCTAACCAACATGGTGAATAAATATGACAAGGAAAGGAACACCTGGAGTGAATTGGGAAGACTTCCAGTACGGGCTGATTCTTCTAATGGATGGGGCCTGGCTTTCAAGGCTTGTGGGGAGAAACTTCTGGTTGTGAGTGGACAAAGGGGTCCAGAAGGTGAAGCTGTTGTGCTGAATTCATGGCGTCCTAGGACAGGGTTCAGGAATGGAACCATAGATTGGAAAGTACTTGGTGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCTGTTATGGGATGGTCCGGTGAGATGCTTTTAGATTGA 1311 0.4386 MNSVESCGASVREIRFFSALPDDSVSAAGNQITKNSRFSVNVPNGCKSSEGEDVEKVNNSFVELDTREGMNDGFPRAGPNDSLLPGLFDDVALNCLAWASRSDYASLACINKRYNLLIRSGYLSELRKKLGIVELEHLVYLVCDPRGWEVFDPKKNRWITLPKIPCDECFNHADKESLAVGSEMLVFGRELMDFAIWKYSLISCNWVKCKEMNRPRCLFGSGNLGSIAIVAGGSDKYGNVLESAELYDSNSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSPIVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNQLYAVEHLTNMVNKYDKERNTWSELGRLPVRADSSNGWGLAFKACGEKLLVVSGQRGPEGEAVVLNSWRPRTGFRNGTIDWKVLGVKEHVGVFVYNCAVMGWSGEMLLD 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00606 436 SMART kelc_smart 275 327 IPR006652 GO:0005515
Gma12g00606 436 SMART kelc_smart 227 274 IPR006652 GO:0005515
Gma12g00606 436 Gene3D - 138 416 IPR015915 GO:0005515
Gma12g00606 436 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 73 428 - -
Gma12g00606 436 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 73 428 - -
Gma12g00606 436 Pfam Kelch motif 215 260 IPR006652 GO:0005515
Gma12g00606 436 Pfam Kelch motif 263 308 IPR006652 GO:0005515
Gma12g00606 436 SUPERFAMILY Kelch motif 147 384 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00606 Gma-Chr12 5097394 5099225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00606 87 306 Miscellaneous Gene Families AT4G33900 26.364 1.56e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00606 - - gmx:100778680 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00606 12 5097394 5099225 Gma12g00606 12 5097394 5099225 ECH
Gma12g00606 12 5097394 5099225 Gma11g01651 11 17863137 17865429 GST