Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00596 ATGAACTATCGCAGAGCCAAAACGATAAATCCAAACCCATTGATCCATTATGCCAATAATCGATCAATACCCCACACCCACAAACCTCGACCCCATGAAAGACCAACTCCAAAGTTCCGCAAGCGCATTCCCTTCGTCACCGAAGTCAAAACAGTGGAAGACCCGGAAGAAGCATTGTCCCTCTTTCACCGTTACAAAGAACAGGGTTTCCGGCACTATTACCCTTCCTATGCCGCATTACTCTACAAACTAGCTCGTTCTAGAATGTTCGATGCCGTTGAAACGATTCTCGCTCACATGAAAGACACCGAAATGCAATGCAGAGAGAGCGTTTTCATTGCCCTCTTTCAACATTACGGTCCCGAAAAAGCCGTTGAACTCTTCAACAGAATGCCTCAGTTCAATTGCACCCGCACGATACAGTCCTTCAACGCGCTTCTCAATGTTCTAATTGACAATGACAGGTTTGACGAGGCCAATGATATTTTTGGTAAATCCTATGAAATGGGTTTTCGTCCAAACACGGTCACGTTCAATATAATGGTGAAGGGGCGGTTGGCAAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTTGTCACTTATAATAGTCTCATTGGGTTTTTGTGTAGGAAGGGTGATTTGGATAAAGCAATGGCCTTGCTCGAGGACATGGGCCAGAAAGGAAAGCATGCAAATGAAGTAACATATGCGCTGTTGATGGAGGGTTTGTGCTCTGTGGAGAAGACTGAGGAAGCTAAGAAGCTTATGTTTGATATGGCATATCGCGGGTGTAAAGCTCAGCCGGTGAATTTTGGTGTTTTGATGAATGATCTTGGTAAGAGAGGAAAGGTTGAAGAGGCCAAATCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAATGGAAGCTTACAAAGTCTTACTTGAGATGCAGATTGGGGGATGTGTGCCGAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCAAATTGGGGATTTTGAGGTTGCTTTGAGTGTTTTGAATGCAATGCTTACTAGTAGACATTGTCCACGTTCGGAAACATTTAATTGTATGGTTGTTGGCTTGTTGAAATCTGGAAATATTGATGGTTCTTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGCTAGAATTTGATTTGGAGAGCTGGGAAACTATAATAAAGTCTGCCTGTAGTGAGAATAAGGGTGCAAGTGAGCTCATGACTGTACTTACATCTCCGTGTATCTAA 1350 0.4348 MNYRRAKTINPNPLIHYANNRSIPHTHKPRPHERPTPKFRKRIPFVTEVKTVEDPEEALSLFHRYKEQGFRHYYPSYAALLYKLARSRMFDAVETILAHMKDTEMQCRESVFIALFQHYGPEKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLESWETIIKSACSENKGASELMTVLTSPCI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Gma12g00596 449 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 22 445 - -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Gma12g00596 449 Gene3D Tetratricopeptide repeat domain 380 445 IPR011990 GO:0005515
Gma12g00596 449 Gene3D Tetratricopeptide repeat domain 309 379 IPR011990 GO:0005515
Gma12g00596 449 Gene3D Tetratricopeptide repeat domain 240 308 IPR011990 GO:0005515
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Gma12g00596 449 Pfam PPR repeat family 208 257 IPR002885 -
Gma12g00596 449 Pfam PPR repeat family 140 184 IPR002885 -
Gma12g00596 449 Pfam PPR repeat family 313 362 IPR002885 -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Gma12g00596 449 Gene3D Tetratricopeptide repeat domain 121 239 IPR011990 GO:0005515
Gma12g00596 449 Gene3D Tetratricopeptide repeat domain 51 120 IPR011990 GO:0005515
Gma12g00596 449 MobiDBLite consensus disorder prediction 23 37 - -
Gma12g00596 449 Pfam PPR repeat 283 310 IPR002885 -
Gma12g00596 449 Pfam PPR repeat 117 136 IPR002885 -
Gma12g00596 449 Pfam PPR repeat 387 415 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 142 175 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 316 350 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 387 419 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 176 209 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 211 240 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 352 383 IPR002885 -
Gma12g00596 449 TIGRFAM PPR: pentatricopeptide repeat domain 284 315 IPR002885 -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Gma12g00596 449 PANTHER OS05G0548600 PROTEIN 22 445 - -
Gma12g00596 449 MobiDBLite consensus disorder prediction 14 38 - -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Gma12g00596 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Gma12g00596 449 SUPERFAMILY TPR-like 62 337 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00596 122 435 Miscellaneous Gene Families AT4G11690 30.573 3.97e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00596 - - gmx:100776556 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00596 12 5001890 5003239 Gma12g00596 12 5001890 5003239 ECH
Gma12g00596 12 5001890 5003239 Gma11g01305 11 11145102 11145518 GST