Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01305 ATGGAGGGTTTGTGCTCTGTGGAGAAGTATGAGGAAGCTAAGAAGCTTATGTTTGATATGGCGTATCATGGGTCTAAAGCTCAGCCGGTGAATTTTGGTGTTTTGATGAAGAATCTTGGGAAGAGAGGAAAGGTTGAAGAGGCCAAGGCTTTGCTTCATGAGATGAAGAAAAGGCGGCTTAAACCAGATGTTGTAACGTACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAATGGAAGCTTACAAAGTCTTACTTGAGATGCAGATTGGGGGATGTGTGCCAAATGCAGCAACATACAGGATGGTGGTTGATGGTTTGTGCCAGATTGGGGATTTTGAGGTTGGTTTGAGTGTTTTGAATGCAATGCTTACTAGTAAACATTTAATTGTCTGGTTGTTGGCTTGTTGA 417 0.4149 MEGLCSVEKYEEAKKLMFDMAYHGSKAQPVNFGVLMKNLGKRGKVEEAKALLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVGLSVLNAMLTSKHLIVWLLAC 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01305 138 PANTHER OS05G0548600 PROTEIN 1 131 - -
Gma11g01305 138 Gene3D Tetratricopeptide repeat domain 58 129 IPR011990 GO:0005515
Gma11g01305 138 Gene3D Tetratricopeptide repeat domain 1 57 IPR011990 GO:0005515
Gma11g01305 138 Pfam PPR repeat 32 59 IPR002885 -
Gma11g01305 138 Pfam PPR repeat 1 24 IPR002885 -
Gma11g01305 138 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 131 - -
Gma11g01305 138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Gma11g01305 138 TIGRFAM PPR: pentatricopeptide repeat domain 65 99 IPR002885 -
Gma11g01305 138 TIGRFAM PPR: pentatricopeptide repeat domain 101 130 IPR002885 -
Gma11g01305 138 TIGRFAM PPR: pentatricopeptide repeat domain 32 64 IPR002885 -
Gma11g01305 138 Pfam PPR repeat family 62 111 IPR002885 -
Gma11g01305 138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Gma11g01305 138 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01305 Gma-Chr11 11145102 11145518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01305 4 128 Glycosyltransferase AT1G05670 30.400 1.39e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01305 - - gmx:100776556 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00596 12 5001890 5003239 Gma11g01305 11 11145102 11145518 GST