Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00593 ATGGAAATTGATCTTTCTCCCCAGTTGGCCAAGAAGGTGTATGAAAGCAATGGTGGGTCTTACCATGCATGGTCCCCTTCTGAGCTTCCCATGTTGCCTGAAGGGAACATTGGTGCTGCCAAACTAGCTCTTCAAAAAAATGGTTTTGCCCTTCCTTGTTACTCTGACTCTTCCAAGGTTGCATATGTTCTCCAAGGAAGTGGAGTTGCAGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTGGTTGCAATTAAGAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTGATAACCTGGTGGTACAACAAGGAGGACACTGAGTTGGTTGTTCTGTTCTTAGGTGACACTTCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTACCTAACTGGTTCCAATGGAATCTTCACTGGCTTCTCAACTGAGTTCGTGGGAAGGGCTTGGGACTTAGAAGAGAAGGATGTGAAGACCCTTGTTGGAAAACAATCAGGCAAGGTCATTGTGAAGCTTGAAGGCAACATCAATCTTCCTGAGCCCAAAGAGGAACATAGAAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGCTGGATGGAAATGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCCTTTCAGGTCACCTACATCGTCAGAGGAAGTGGTCGTGCTCAGGTTGTTGGTGCTGATGGTTGCAGGGTTTTGGAGACAACTGTGAAGGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACTCTGATGGATTGGAGTGGTTCTCTATCATCACCACCCCCAATCCTGTGTTTACTCACCTTGCTGGAAGTATTGGGGCGTGGAAGGCTCTTTCACCCACGGTTCTGCAGGCATCTTTCAATGTAGATGCAGGACTTGAGCAACTCTTCCGTTCAAAGAGAAATGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.465 MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLPEGNIGAAKLALQKNGFALPCYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAHKTGEFTDFYLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGKVIVKLEGNINLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAFQVTYIVRGSGRAQVVGADGCRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPNPVFTHLAGSIGAWKALSPTVLQASFNVDAGLEQLFRSKRNADAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00593 356 CDD cupin_11S_legumin_N 4 173 - -
Gma12g00593 356 Gene3D Jelly Rolls 3 196 IPR014710 -
Gma12g00593 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Gma12g00593 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Gma12g00593 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Gma12g00593 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Gma12g00593 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Gma12g00593 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
Gma12g00593 356 CDD cupin_11S_legumin_C 198 353 - -
Gma12g00593 356 Gene3D Jelly Rolls 197 356 IPR014710 -
Gma12g00593 356 SUPERFAMILY RmlC-like cupins 12 346 IPR011051 -
Gma12g00593 356 SMART Cupin_1_3 195 339 IPR006045 -
Gma12g00593 356 SMART Cupin_1_3 3 157 IPR006045 -
Gma12g00593 356 Pfam Cupin 10 156 IPR006045 -
Gma12g00593 356 Pfam Cupin 199 335 IPR006045 -
Gma12g00593 356 PANTHER - 2 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00593 Gma-Chr12 4970826 4973712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00593 35 333 Miscellaneous Gene Families AT2G18540 21.777 2.08e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00593 - - gmx:100782964 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00593 12 4970826 4973712 Gma12g00593 12 4970826 4973712 ECH
Gma12g00593 12 4970826 4973712 Gma11g01302 11 11121461 11123497 GST
Gma13g02962 13 44198188 44200900 Gma12g00593 12 4970826 4973712 PCT
Gma15g00403 15 3361433 3363859 Gma12g00593 12 4970826 4973712 PCT
Gma12g00593 12 4970826 4973712 Gma13g02962 13 44198188 44200900 PCT
Gma12g00593 12 4970826 4973712 Gma15g00403 15 3361433 3363859 PCT