Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00575 ATGGCAACGAATTCTTCTAATGGAGCAACAAAGCAACCTCCCATGCCATCTCCCTTGCGGTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGATGGGAACCAAAGGTCAAGTTGCGTGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCAGAGGCTTGGGGTTCCCAAGAGCAACTAA 1029 0.4218 MATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPKVEINMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVPKSN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00575 342 Pfam GDP-mannose 4,6 dehydratase 32 326 IPR016040 -
Gma12g00575 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 3-RELATED 1 341 - -
Gma12g00575 342 CDD UGD_SDR_e 29 333 - -
Gma12g00575 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 336 IPR036291 -
Gma12g00575 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Gma12g00575 342 Gene3D - 26 152 - -
Gma12g00575 342 Gene3D - 153 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00575 Gma-Chr12 4830178 4835229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00575 26 325 Miscellaneous Gene Families AT1G02000 23.795 2.20e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00575 K08678 - gmx:100819843 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00575 12 4830178 4835229 Gma11g01281 11 10930163 10935018 GST
Gma12g00575 12 4830178 4835229 Gma15g00385 15 3223103 3228182 PCT