Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00538 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGAAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAAGAGATAGGGATGTTACTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGCGAGAGCTTAATATTTTTAGGAGTGGATCGGCACCTCCAACTGTGGAGGGTTCTTTGAGTGCCGTTGGAGGGTTGTTTGCTGCTGGTGGTGGTGGTGGTCCTGCTACTGGTGCTCCTGCTGCCTTTTTGGAGTTTCGAGGAGCGAAGGATGTGAATGGGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTACTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGATTTCAACAAAGACTTAAAGGTGGAGCTTCTGCTCTAGGTGGAATTGGAGATAGGAGGAAAGTGAACAGGACTGATGATAATGCTGGAAGATTGCTTTTTGCTACCCCACCAGGTTTTAACATGAGGAAACTAGAGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAATTTTTTCAGGATGATTTGGGGCATAATACCTCTATCACACGCCTTCCTTCTCGCCCAGCCAGTCGTAATGCATTTGATGAAAATGATATCATTAGTTCTGCTGAACCAGAGTTGGCTCATGTACGTCGTGAGTCCACTCCCACTGATGCACTAAGGTCAGGATCAAATGTTCAAGGATCATCTGCAGCCCAAAATGTTGGCTTACCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTATTGCTAGGGCTCCCAGTCCCTGCATCACTCCCATTGGTGGCGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAATCCAGATGCATTTAATGGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTATCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAACCATTTCCCATCACAAGTTGAATCAGATGTAGATAGTCATCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAGGATCATGGGAAGCAACAGGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGCAGGAGTGGATCAGGTCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATACTTCAAAGGATCGCCTACCTCCCATTTTAGTGGAGGAGGAAGTATGCCACCTCAGTACCAGCCTTTAGATGGTACAAATTCATCATTTACTAACTATGGTATGAGTGGCTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTAGGCACTGGTAATCTGCCACCCTTGTTTCAAAATGTTGCTGCGGCATCAGCAATGGCTGCCCCTGGAATGGACTCGAGAATTCTTGGATGTGGTTTGGCTTCTGGAACTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCAAGGCAGTGCTCTTCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACCTGAGGACGTCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTGGGCAATTCATACATGAATTTGCTTGAGCTCCAGAAAGCTTATCTTGGGTCTGTCCTCTCACCTCAGAAATCCCAATACAATGTACCGCCGGGTGGTAAATCAGGCAGCTTCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGCTGGGTTGTCTTACCCAGGAAGTCCTATGGCAAACTCTGTTGTGTCCACTTCTCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCATTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATAATGAGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATACGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTGCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTACTAGTGAGTCAGATGCTTGGCACCACAGATGAAAACGAACCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAGCGCGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAG 3162 0.4434 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFAAGGGGGPATGAPAAFLEFRGAKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDNAGRLLFATPPGFNMRKLESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEFFQDDLGHNTSITRLPSRPASRNAFDENDIISSAEPELAHVRRESTPTDALRSGSNVQGSSAAQNVGLPASYSYAAAVGSSLSRSTTPDPQLIARAPSPCITPIGGGRAIASDKRAIANPDAFNGVSSGINESADLVAALSVMNLSADDVLDGENHFPSQVESDVDSHQRYLFGRQGGQDHGKQQAYLKKSESAHLQNSSKSSRSGSGLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSGGGSMPPQYQPLDGTNSSFTNYGMSGYAGNPALASLMTNQLGTGNLPPLFQNVAAASAMAAPGMDSRILGCGLASGTAAPSDVHNLGRMGNQIQGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPPGGKSGSFTPHGYYGNPAYGAGLSYPGSPMANSVVSTSPVGSGSPVRHNELNMHFASGMRNLAGVMGPWHVDNENIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELADKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSQMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVSRVEKLVAAGERRIAAQAPPQPA 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 939 970 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 793 826 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 865 900 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 984 1013 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 721 755 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 836 859 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 757 790 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Pumilio-family RNA binding repeat 904 935 IPR001313 GO:0003723
Gma12g00538 1053 Pfam Nucleic acid binding protein NABP 308 716 IPR012940 -
Gma12g00538 1053 Gene3D - 697 1043 IPR011989 -
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 861 897 IPR001313 GO:0003723
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 934 969 IPR001313 GO:0003723
Gma12g00538 1053 MobiDBLite consensus disorder prediction 248 275 - -
Gma12g00538 1053 SUPERFAMILY ARM repeat 700 1034 IPR016024 -
Gma12g00538 1053 MobiDBLite consensus disorder prediction 1 24 - -
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 898 933 IPR001313 GO:0003723
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 825 860 IPR001313 GO:0003723
Gma12g00538 1053 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1045 - -
Gma12g00538 1053 CDD Pumilio 713 1033 IPR033712 GO:0003723
Gma12g00538 1053 MobiDBLite consensus disorder prediction 403 470 - -
Gma12g00538 1053 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 697 1037 IPR033133 GO:0003723
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 789 824 IPR001313 GO:0003723
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 970 1011 IPR001313 GO:0003723
Gma12g00538 1053 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1045 - -
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 753 788 IPR001313 GO:0003723
Gma12g00538 1053 MobiDBLite consensus disorder prediction 386 470 - -
Gma12g00538 1053 MobiDBLite consensus disorder prediction 261 275 - -
Gma12g00538 1053 SMART pum_5 934 969 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 753 788 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 976 1011 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 861 897 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 898 933 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 717 752 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 825 860 IPR001313 GO:0003723
Gma12g00538 1053 SMART pum_5 789 824 IPR001313 GO:0003723
Gma12g00538 1053 ProSiteProfiles Pumilio RNA-binding repeat profile. 717 752 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00538 Gma-Chr12 4465917 4472988 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00538 K17943 - gmx:100787039 1987.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00538 12 4465917 4472988 Gma12g00538 12 4465917 4472988 ECH
Gma11g01239 11 10542950 10568422 Gma12g00538 12 4465917 4472988 ECH
Gma12g00538 12 4465917 4472988 Gma11g01239 11 10542950 10568422 GST