Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01239 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATCGGGATGTTGCTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAACGAGAGCTTAATATTTATAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGCTGCTGGTGCTCCTGCCGCTGGTGCTCCTGTCGCCTTTTCGGAATTTCAAGGGACTAAGGATGTGAATGGGATTACTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTACTACTCCAATGTGAATTTGAACCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCAGCTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGAACTGATGATAATGGTGGAAGATTGCTTTTTCCTACCCCGCCAGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTAAGCAAACAGAAGAGTTTTGCCGAAATTTTTCAGGATGATTTGGGGCATAATACCTCTATCAGACGACTTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTTCTGCCGAAGCAGATTTGGCTCATGTACACCGTGAGTCCGCACCCACTGATGTGTTAAGATCAGGATCAAATGTTAAAGGATCATCTGCAGCCCAAAATGTTGGCCTACCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCGCTACGCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACACCTATTGGTGGCGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCGAGTACAGATGCTTTTAATGGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAACAGATGATGTGCTAGATGGTGAAAACCATTTGCCATCACAGATTGAATCAGGTGTTGATAATCACCAGAGATATCTTTTTGGTAAGCAAGATCATGGGAAGCAACATGCTTTTTCAAAGAAATCTGAATCAGCACACTTACAAAATTCAAGTAAGAAGAGCAGGAGTGGGTCAGATCTCAACAATCCATCCTTGGATAGGCAGGTTGAGTTACAAAAATCTACTGTTCCTTCGAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACCCCAGTACCAGCCTTTAGATAGTACAAATTCATCATTTGGTAACTATGGTCTGAGTGGCTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTGGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTGAGGACATCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCTGCTGTGGACAGGAACTACTTAGGCAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATCCTCTCTCCTCAGAAATCCCAATACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGATTGTCTTATCCAGGAACTGCAATGGCAAACTCTGTTGTATCCACTTCTCCAGTTGGATCTGGAAGTCCTATTAGGCACAATGAGCTGAATATGCAATTTGCCTCTGGAATGAGAAATTTAGCTGGGGCCATGGGACCTTGGCATGTAGATACTGGGAATATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAATTTAAAAGCAATAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACTTGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGTGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCGATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTCACGCTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTGGCTCAGGATCAATATGGCAACTACGTTGTTCAGCATGTTCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCTCCACAGATGAAAATGAACCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTGTACAGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTAGCTGCTGGAGAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAG 3150 0.4381 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIYRSGSAPPTVEGSLSAVGGLFGGAAGAPAAGAPVAFSEFQGTKDVNGITSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDNGGRLLFPTPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGHNTSIRRLPSRPASRNAFDDNDIISSAEADLAHVHRESAPTDVLRSGSNVKGSSAAQNVGLPASYSYAAAVGSSLSRSATPDPQLVARAPSPCITPIGGGRAIASDKRAIASTDAFNGVSSGINESADLVAALSVMNLSTDDVLDGENHLPSQIESGVDNHQRYLFGKQDHGKQHAFSKKSESAHLQNSSKKSRSGSDLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPPQYQPLDSTNSSFGNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPGMDSRILGGGLASGAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPAVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGTAMANSVVSTSPVGSGSPIRHNELNMQFASGMRNLAGAMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNLVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLHGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELADKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQAPPQPA 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01239 1049 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 693 1033 IPR033133 GO:0003723
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 966 1007 IPR001313 GO:0003723
Gma11g01239 1049 MobiDBLite consensus disorder prediction 389 466 - -
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 785 820 IPR001313 GO:0003723
Gma11g01239 1049 MobiDBLite consensus disorder prediction 144 192 - -
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 935 968 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 861 896 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 980 1006 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 832 855 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 753 787 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 900 931 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 789 822 IPR001313 GO:0003723
Gma11g01239 1049 Pfam Pumilio-family RNA binding repeat 717 751 IPR001313 GO:0003723
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 894 929 IPR001313 GO:0003723
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 821 856 IPR001313 GO:0003723
Gma11g01239 1049 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1041 - -
Gma11g01239 1049 SMART pum_5 821 856 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 713 748 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 857 893 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 749 784 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 930 965 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 972 1007 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 894 929 IPR001313 GO:0003723
Gma11g01239 1049 SMART pum_5 785 820 IPR001313 GO:0003723
Gma11g01239 1049 MobiDBLite consensus disorder prediction 1 24 - -
Gma11g01239 1049 SUPERFAMILY ARM repeat 696 1030 IPR016024 -
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 930 965 IPR001313 GO:0003723
Gma11g01239 1049 CDD Pumilio 709 1029 IPR033712 GO:0003723
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 749 784 IPR001313 GO:0003723
Gma11g01239 1049 MobiDBLite consensus disorder prediction 400 466 - -
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 713 748 IPR001313 GO:0003723
Gma11g01239 1049 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1041 - -
Gma11g01239 1049 Pfam Nucleic acid binding protein NABP 307 712 IPR012940 -
Gma11g01239 1049 ProSiteProfiles Pumilio RNA-binding repeat profile. 857 893 IPR001313 GO:0003723
Gma11g01239 1049 Gene3D - 693 1039 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01239 Gma-Chr11 10542950 10568422 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01239 K17943 - gmx:100803806 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01239 11 10542950 10568422 Gma11g01239 11 10542950 10568422 ECH
Gma11g01239 11 10542950 10568422 Gma12g00538 12 4465917 4472988 ECH
Gma12g00538 12 4465917 4472988 Gma11g01239 11 10542950 10568422 GST