Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00533 ATGCAATCCGTTCAAGGGCTTACGCCCAACTACGTATTCGTCATCCCCAGCTTCCTCAAAACTCGCGGCCACGTCGGGGATCGAATCACCGGAGAGAAAATACACGGCTTCATTTTGAAGTGTTCGTTCGAATTTGATTCGTTTGTGTCCAGTTCTTTGATTGTTATGTACTCCAAGTGTGAGAAAGTTGAGGATGCGCGCAAGGGTGCTGCAAATGAGGCACTGGGTTTGGTGGAAACTATGAAGTTGATGGGTTTGAAGCCAAATGTGGTAACTTGGAACTCTTTGATATCTGGGTTTTTGCAGAAGGGTGACCAAGGAATGAAATTTCGTAATAAGGAAGCATTTGATACGTTTAAGCAAATGTTGAGTCATGGGTGCTGCCCAACTTCGGCTACTATAAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAGGCGAGGAATTTGTTTAGTAGGATGCCAGAGAAGAACACCGTACGTTACGTGGAACTCTATCATTTTTGGTTTTGTGAATCACGGGTATTGCGAGGAAGCTATTGAACTCTTCAATCAGATGGAAAAGGAAAGGGCAGCCAAGCTGGATCATTTAACTTTCACAGCAGCACTCACTGCATGCAGTCATGTTGGAGATATTGAACTTGGGCAGAAGCTATTCAAGATTATGCAAGAAAAATACAGTATTGAACCACCGCTAGAGCATTAG 711 0.443 MQSVQGLTPNYVFVIPSFLKTRGHVGDRITGEKIHGFILKCSFEFDSFVSSSLIVMYSKCEKVEDARKGAANEALGLVETMKLMGLKPNVVTWNSLISGFLQKGDQGMKFRNKEAFDTFKQMLSHGCCPTSATISTLLPACATAARVRRGICLVGCQRRTPYVTWNSIIFGFVNHGYCEEAIELFNQMEKERAAKLDHLTFTAALTACSHVGDIELGQKLFKIMQEKYSIEPPLEH 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00533 236 PANTHER OS03G0271300 PROTEIN 9 68 - -
Gma12g00533 236 PANTHER OS03G0271300 PROTEIN 162 236 - -
Gma12g00533 236 PANTHER OS03G0271300 PROTEIN 76 150 - -
Gma12g00533 236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Gma12g00533 236 Pfam PPR repeat family 88 142 IPR002885 -
Gma12g00533 236 Pfam PPR repeat family 163 209 IPR002885 -
Gma12g00533 236 TIGRFAM PPR: pentatricopeptide repeat domain 163 191 IPR002885 -
Gma12g00533 236 Gene3D Tetratricopeptide repeat domain 17 157 IPR011990 GO:0005515
Gma12g00533 236 Gene3D Tetratricopeptide repeat domain 158 233 IPR011990 GO:0005515
Gma12g00533 236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 129 IPR002885 -
Gma12g00533 236 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 162 236 - -
Gma12g00533 236 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 76 150 - -
Gma12g00533 236 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00533 Gma-Chr12 4424418 4425393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00533 9 236 Glycoside Hydrolase AT3G49170 25.856 2.88e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00533 - - gmx:100790576 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00533 12 4424418 4425393 Gma11g01234 11 10503811 10505606 GST