Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01234 ATGTACGCTCGCGATCGAGCGTTGCACGCTGGCAAGAAGCTTCACGCGCACCTAGTCACCAACGGTTTCGCTCGTTTCAACGTCGTTGCTTCCAACCTCGTATCCTTCTACACATGCTGTGGCCAACTCTCCCACGCGCGGAAACTGTTCGACAAAATTCCCACCACAAATGTTCGCCGCTGGATTGCTCTCATTGGCTCCTGCGCTCGCTGCGGCTTCTACGATCACGCTCTCGCCGTGTTCTCTGAGATGCAAGCCGTTCAAGGGCTTACGCCCAACTACGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGCCACGTCGGGGATCGAATTACAGGAGAGAAAATACATGGCTTCATTTTGAAGTGTTCGTTCGAACTTGATTCGTTTGTGTCCAGTTCTTTGATTGTTATGTACTCCAAGTGTGCGAAAGTTGAGGATGCGCGCAAGGTGTTTGATGGGATGACTGTCAAAGACACTGTGGCTCTAAATGCTGTTGTTGCTGGGTATGTTCAACAGGGTGCTGCAAACGAGGCACTGGGTTTGGTGGAAAGTATGAAGTTGATGGGTTTGAAGCCAAATGTGGTAACTTGGAACTCTTTGATATCTGGGTTTTCACAGAAGGGTGACCAAGGAAGGGTGTCTGAGATTTTTAGGTTGATGATTGCAGATGGAGTGGAGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGTAATAAGGAAGCATTTGACACGTTTAAGCAAATGTTGAGTCATGGGTTCCACCCAACTTCAGCTACTATAAGCGCCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAGTGTTGGGAGAGAGATTCATGGCTACGCTTTGGTGACTGGGGTGGAGGGAGATATATatATATTCAATAGAGTAGATGGGGATGGGATGAGATGGAAGGAAAAGGAGAGGAATAGCACCCATTTCATTGTCTAG 981 0.4811 MYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYIFNRVDGDGMRWKEKERNSTHFIV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01234 326 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 159 206 - -
Gma11g01234 326 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 206 304 - -
Gma11g01234 326 Pfam PPR repeat 61 85 IPR002885 -
Gma11g01234 326 Pfam PPR repeat 134 157 IPR002885 -
Gma11g01234 326 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 157 - -
Gma11g01234 326 PANTHER OS03G0271300 PROTEIN 206 304 - -
Gma11g01234 326 Pfam PPR repeat family 229 277 IPR002885 -
Gma11g01234 326 Pfam PPR repeat family 159 207 IPR002885 -
Gma11g01234 326 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Gma11g01234 326 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Gma11g01234 326 PANTHER OS03G0271300 PROTEIN 55 157 - -
Gma11g01234 326 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 85 - -
Gma11g01234 326 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Gma11g01234 326 PANTHER OS03G0271300 PROTEIN 159 206 - -
Gma11g01234 326 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Gma11g01234 326 TIGRFAM PPR: pentatricopeptide repeat domain 197 231 IPR002885 -
Gma11g01234 326 TIGRFAM PPR: pentatricopeptide repeat domain 63 93 IPR002885 -
Gma11g01234 326 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Gma11g01234 326 Gene3D Tetratricopeptide repeat domain 1 156 IPR011990 GO:0005515
Gma11g01234 326 Gene3D Tetratricopeptide repeat domain 160 308 IPR011990 GO:0005515
Gma11g01234 326 PANTHER OS03G0271300 PROTEIN 8 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01234 Gma-Chr11 10503811 10505606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01234 4 307 Glycoside Hydrolase AT3G49170 26.822 4.22e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01234 - - gmx:100790576 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00533 12 4424418 4425393 Gma11g01234 11 10503811 10505606 GST