Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00483 ATGATAAAGCCTCAAGTGTATCAATCACAGAACACCAACCAAATCCTCTTGTTTCTGCAGAGGCCATCCCTTCACAGTATTAGGAGTAGTATTCCACTATGGTTGGGGAACAAAGTGCAGAGGCAAAAAAAACTTAACCACCTCGTTCTGGTTTCTCGCAACGTTGAAACTAATTCTACTACTTCTTcaacaacaacaacaacaacaacaacaGATACTCATACAGATGAGAGTAGAGTGAAGGTTAAGGCCATAGTTAAGGTGAAAGTAACTGCGGGTGGTTTCTTTTCAAGTCTGAGGTTAGACAGAGGAATCGATGATATAACAGATTTGCTCGGTAAATCTCTCCTCTTAGAGCTTGTTAGCTCTGAGCTTGACCCCGTGACGGGACTAGAGAAGGAAACACTGAAAGCGTATGCACACAAAGCAGGAAATGGTGAGGAGTCGGTTAAGTACGAAGCTAAATTTGAAGTTCCAAATGATTTTGGAGAGGTTGGTGCTGTTCTTGTTGAGAATGAGCATCACAAGGAGATGTTCCTTGAAACCATCCACCTCGATGGCTTCCCTGAGGGTCCTATTCATTTTCATTGTGCCTCTTGGGTTCACTCCAAGTTCGATAATCCCACCAATAGGGTCTTCTTCTCCAACAAGTGTTACTTACCGCAAGAGACACCGGGTGGTTTAAGAAGACTAAGAGCAAAAGAATTGAGTAATCTGCGAGGCAATGGAGAAGGAGAACGCAAGAGCTTTGAAAGAATATACGATTACGACATATACAATGACATTGGAGATCCTGATAAAAGCCTTGAACTTCAGAGACCTCCTTTAGGAGGTAACGAGAGACCTTATCCTAGACGTTGTCGAACTGGTCGTCCACATAGTGAAGCAGATCCATTGTCAGAGAAAAGAAGTAGAAAGTTTTACGTTCCAAGGGACGAGTGCTTCTCAGAGGTGAAGCAGTTGACGTTCTCAACCAAGACATTACACTCGGTGTTACTTATATTGCTTCCATCTCTGGGGAAAATTATCAAAGAAAAGGACCTTGCATTTTCCTACTTCGACGACATAGATTCACTCTTCAGCCATGGACTTGACTTGCCTCCTGAAGAAACCGAGAAGGGATTCCTAGGAAAAATCATGCCTAGGCTAGTCAAATCCATTTCTGGTGACAGGGCACACGTGCTTCGCTTCGAGACCCCAGAGACTATGAGCAGGGACAGATTTTTCTGGTTTAGGGATGAGGAATTTGCTAGACAGACTGTTGCTGGTCTCAACCCATATAGCATACGATTGGTCACAGAATGGCCATTGAAAAGTAAACTTGACCCAGAAAAATATGGTCCACCAGAATCAGCAATCACCTCAGAAATTATCAACAAAGAGATTGGAGGCATAATGTCTGTAGAAAAGgcgattgaagaaaagaagctgttcatgttagactaccatgacgtacttttaccctacgtcaacaaagtacgcaaactcaaggggaaaacactgtatggttcacgaactttgttctttctaaacccagaggggacactgaggcctctagccattgagcttactcgaccaccatcattgtcaaataaaacaggccaatggaagcaagttttcacgccttcttggcactcaaccagtgtttggctctggaggttagccaaggctcatgttcttgcacatgactctggctatcaccaacttgttagtcattggttaagaactcactgtgcgacagagccgtatgttattgcaaccaacagacaacttagtgagatgcaccccataaacaaattgctacaccctcatttccgttacacaatggagattaacgctcttgcacgggaagcacttattaatgctgatggcacaattgagagctcatttgcaccaggaaagtatgccttagagattagctccgctgcttatgctctcgaatggcggtttgacaagcaggcactaccagcagatctaattagaagGGGAATTGCTGTTGAAGATCCATTTTCTCCACATGGCTTAAAGCTTACCATTCAAGACTATCCTTTTGCCAATGATGGACTCCTTCTGTGGGATGCTATAAAGCTATGGGTCACTGACTATGTCAACCACTACTACCCTGAACCAAGTCTTGTAGAGTCAGATGAAGAGCTGCAGGCATGGTGGACAGAGATTAGAACCCTTGGTCATGCTGACAAAAAAGATGAGCCATGGTGGCCACATCTTAAAACCCCAAAAAACCTCATTGGAATCCTCAACACAATCATATGGGTAACTTCTGGTCACCATGCAGCTGTGAACTTTGGGCAATATGTTTATGGGGGATATTTCCCAAATAGGCCTACAATTGCCAGGACTAAAATGCCCTCAGAGGACCCTACAGAAGAAGAGTGGAAAAAGTTCATTGAAAAGCCTGAAAGAGCACTTCTGAAGTGCTTTCCTTCACAACTTCAAGCAACTAGAGTCATGGCTGTCTTGGACATACTCTCAACTCATTCACCAGATGAGGAATACATAGGAGAAAAGATGGAACCATCATGGGGTGAAGATCCTGTCATAAAGGCTTCCTTTGAAAGATTTAGAGAGAGACTGAAGAAACTAGAAACACTGATTGATGAGAGGAATGGAAACACAAAGTTGAAGAACAGAAATGGAGCTGGCATTGTACCGTACGAGCTTTTGAAACCTTTCTCAAAGCCAGGTGTGACTGGAATGGGGGTTCCCTGTAGTATATCTATTTAA 2745 0.337 MIKPQVYQSQNTNQILLFLQRPSLHSIRSSIPLWLGNKVQRQKKLNHLVLVSRNVETNSTTSSTTTTTTTTDTHTDESRVKVKAIVKVKVTAGGFFSSLRLDRGIDDITDLLGKSLLLELVSSELDPVTGLEKETLKAYAHKAGNGEESVKYEAKFEVPNDFGEVGAVLVENEHHKEMFLETIHLDGFPEGPIHFHCASWVHSKFDNPTNRVFFSNKCYLPQETPGGLRRLRAKELSNLRGNGEGERKSFERIYDYDIYNDIGDPDKSLELQRPPLGGNERPYPRRCRTGRPHSEADPLSEKRSRKFYVPRDECFSEVKQLTFSTKTLHSVLLILLPSLGKIIKEKDLAFSYFDDIDSLFSHGLDLPPEETEKGFLGKIMPRLVKSISGDRAHVLRFETPETMSRDRFFWFRDEEFARQTVAGLNPYSIRLVTEWPLKSKLDPEKYGPPESAITSEIINKEIGGIMSVEKAIEEKKLFMLDYHDVLLPYVNKVRKLKGKTLYGSRTLFFLNPEGTLRPLAIELTRPPSLSNKTGQWKQVFTPSWHSTSVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYVIATNRQLSEMHPINKLLHPHFRYTMEINALAREALINADGTIESSFAPGKYALEISSAAYALEWRFDKQALPADLIRRGIAVEDPFSPHGLKLTIQDYPFANDGLLLWDAIKLWVTDYVNHYYPEPSLVESDEELQAWWTEIRTLGHADKKDEPWWPHLKTPKNLIGILNTIIWVTSGHHAAVNFGQYVYGGYFPNRPTIARTKMPSEDPTEEEWKKFIEKPERALLKCFPSQLQATRVMAVLDILSTHSPDEEYIGEKMEPSWGEDPVIKASFERFRERLKKLETLIDERNGNTKLKNRNGAGIVPYELLKPFSKPGVTGMGVPCSISI 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00483 914 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 218 914 IPR013819 GO:0016702|GO:0046872
Gma12g00483 914 SUPERFAMILY Lipoxigenase 220 914 IPR036226 -
Gma12g00483 914 MobiDBLite consensus disorder prediction 284 302 - -
Gma12g00483 914 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 81 219 IPR036392 GO:0005515
Gma12g00483 914 Pfam Lipoxygenase 227 897 IPR013819 GO:0016702|GO:0046872
Gma12g00483 914 PANTHER LIPOXYGENASE 24 913 IPR000907 GO:0016702|GO:0046872
Gma12g00483 914 Gene3D - 409 544 - -
Gma12g00483 914 PRINTS Lipoxygenase signature 549 566 IPR013819 GO:0016702|GO:0046872
Gma12g00483 914 PRINTS Lipoxygenase signature 567 584 IPR013819 GO:0016702|GO:0046872
Gma12g00483 914 PRINTS Lipoxygenase signature 587 607 IPR013819 GO:0016702|GO:0046872
Gma12g00483 914 MobiDBLite consensus disorder prediction 265 302 - -
Gma12g00483 914 ProSitePatterns Lipoxygenases iron-binding region signature 1. 567 581 IPR020833 GO:0016702|GO:0046872
Gma12g00483 914 SMART LH2_4 84 216 IPR001024 GO:0005515
Gma12g00483 914 ProSiteProfiles PLAT domain profile. 95 215 IPR001024 GO:0005515
Gma12g00483 914 PANTHER LIPOXYGENASE 24 913 - -
Gma12g00483 914 Pfam PLAT/LH2 domain 149 214 IPR001024 GO:0005515
Gma12g00483 914 Gene3D - 546 913 - -
Gma12g00483 914 PRINTS Plant lipoxygenase signature 185 203 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 211 232 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 250 266 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 282 301 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 347 368 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 395 411 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 434 453 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 502 526 IPR001246 GO:0016491
Gma12g00483 914 PRINTS Plant lipoxygenase signature 827 841 IPR001246 GO:0016491
Gma12g00483 914 Gene3D - 220 318 - -
Gma12g00483 914 Gene3D - 319 407 IPR027433 -
Gma12g00483 914 Gene3D PLAT/LH2 domain 49 219 - -
Gma12g00483 914 ProSitePatterns Lipoxygenases iron-binding region signature 2. 594 604 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00483 Gma-Chr12 4019938 4027854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00483 158 914 Acyl Lipid Metabolism Gene Families AT3G45140 59.921 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00483 K00454 - gmx:100797626 1792.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00483 12 4019938 4027854 Gma12g00483 12 4019938 4027854 ECH
Gma11g01181 11 10030240 10039604 Gma12g00483 12 4019938 4027854 ECH
Gma12g00483 12 4019938 4027854 Gma11g01182 11 10051790 10063453 GST