Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00477 ATGACGGTAGCAGCAGGAATGGGTTACGCTCTGCTAGCGTTAGGACCCTCTCTCTCCATCTTCGTTTCTGTCATTTCCAAAAAACCCTTCCTCATTCTCACCGTTCTCTCCAGCACACTGCTGTGGCTTATAAGTTTGATTGTGCTGTCTGGAATATGGAGGGGGGTTTTGCCTCTCAACACAACAGCTTGGTGGCCTTTTGGAATACTCATTTTCTCATCTGTTGCTTTTCAAGAAGCCCTCAGGCTTTTCTCCTGGAAAATATATAAGAGGTTACAAGATATGTTAGATGCCTTTGCTGATAGAATATCAAAACCACATCTTCACCTGACAGATAAGATGCTGATTGCTCTGGCTGGTGGGTTGGGTCATGGTGTTGCCCATGCTGTGTTCTTCTGCATCAGCCTATTAACTCCTGCATTTGGTCCAGCAACATATTTCGTTGACAGGTGTTCAAAAGTTCCATTTTTCCTTCTTTCTGCGATTATTGCTCTTGCATTTGTCACAATCCACACTTTCTCAATGGTCATCGCATTTAATGGGTACTCAGAGGGGAACAAAGTGGATCAATATTTTGTTCCCATTGTTCACGTTGTCGCTGGAATGGTGACTCTGGTGAATTTGGCCCCTGGCGGTTGTGCTGTTGGCATTCCTCTTCTTTATTTGGTTGCAATCTTGACCTTGATTCATTGTGGGAGGATGGTTTGGAGAAAATTGACAGAAAACCCAATCAGGCTGGTTCACTCGTAG 750 0.444 MTVAAGMGYALLALGPSLSIFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLNTTAWWPFGILIFSSVAFQEALRLFSWKIYKRLQDMLDAFADRISKPHLHLTDKMLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDRCSKVPFFLLSAIIALAFVTIHTFSMVIAFNGYSEGNKVDQYFVPIVHVVAGMVTLVNLAPGGCAVGIPLLYLVAILTLIHCGRMVWRKLTENPIRLVHS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00477 249 Pfam Aph-1 protein 2 233 IPR009294 GO:0016021|GO:0016485|GO:0043085
Gma12g00477 249 PANTHER GAMMA-SECRETASE SUBUNIT APH-1 1 241 IPR009294 GO:0016021|GO:0016485|GO:0043085
Gma12g00477 249 PANTHER GAMMA-SECRETASE SUBUNIT APH-1 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00477 Gma-Chr12 3890725 3894015 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00477 K06172 - gmx:100794637 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00477 12 3890725 3894015 Gma12g00477 12 3890725 3894015 ECH
Gma12g00477 12 3890725 3894015 Gma11g01175 11 9908734 9911902 GST