Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma12g00453 | ATGGCCAATGGCAACACTAGTCATCGCTTCAAGCTCTTGCTTTTCCTTCTAACTCTGCACTCTTCATTCGCTGAGATTTTCTTCGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGCTATCCGATTGGAAAAGGAGTGAAGGAAAAGCGGGTACCTTCAAGCACACAGCAGGAAAATGGTCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAATGACGCCAAGCATTTTGCCATATCTGCAAAGATACCCGAGCTAAGCAACAAGGACAGAACCCTGGTGCTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGTTCACAGACAAAGAAGCTCCATCTTATACTATCATACCAGGGGCAGAATTACCCCATTAGAAAAGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCGGCTGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATCCCTGATCCAAAAGCCAAGAAGCCTGTTGAATGGGATGATGAAGATGATGGACTATGGAAGCCCCCGAAGATTCCCAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGATGAATTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGAGGCATCGTCGAAGGCCGGATCCCCGTGATATGGATGATTACCATGATGAACTTTGAAGACTGCACTAAGGGTAGGTGGCAGGTAACAGCTGGTCTGCTTCTGCTACTGCTACTGTATTCAAAGGATGGAATTTAA | 1293 | 0.4316 | MANGNTSHRFKLLLFLLTLHSSFAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPELSNKDRTLVLQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPVEWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQIVDEFMANNREAEKEAFEEAEKERRAREEEEAQRAREEGGIVEGRIPVIWMITMMNFEDCTKGRWQVTAGLLLLLLLYSKDGI | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma12g00453 | 430 | ProSitePatterns | Calreticulin family signature 1. | 103 | 118 | IPR018124 | GO:0005509 | |
| Gma12g00453 | 430 | MobiDBLite | consensus disorder prediction | 248 | 268 | - | - | |
| Gma12g00453 | 430 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 22 | 223 | IPR013320 | - | |
| Gma12g00453 | 430 | MobiDBLite | consensus disorder prediction | 224 | 271 | - | - | |
| Gma12g00453 | 430 | Coils | Coil | 356 | 385 | - | - | |
| Gma12g00453 | 430 | PANTHER | CALRETICULIN AND CALNEXIN | 10 | 386 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PIRSF | Calreticulin | 5 | 390 | IPR009169 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | ProSitePatterns | Calreticulin family signature 2. | 135 | 143 | IPR018124 | GO:0005509 | |
| Gma12g00453 | 430 | Gene3D | Calreticulin/calnexin, P domain | 199 | 319 | IPR009033 | GO:0005509|GO:0005515 | |
| Gma12g00453 | 430 | Pfam | Calreticulin family | 29 | 263 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | Pfam | Calreticulin family | 265 | 338 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | MobiDBLite | consensus disorder prediction | 224 | 238 | - | - | |
| Gma12g00453 | 430 | PANTHER | CALRETICULIN-3 | 10 | 386 | - | - | |
| Gma12g00453 | 430 | MobiDBLite | consensus disorder prediction | 363 | 383 | - | - | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 319 | 339 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 105 | 123 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 131 | 147 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 248 | 270 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 286 | 305 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | PRINTS | Calreticulin signature | 220 | 233 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma12g00453 | 430 | SUPERFAMILY | P-domain of calnexin/calreticulin | 206 | 321 | IPR009033 | GO:0005509|GO:0005515 | |
| Gma12g00453 | 430 | Gene3D | - | 25 | 380 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma12g00453 | Gma-Chr12 | 3707059 | 3713457 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma12g00453 | 10 | 346 | Miscellaneous Gene Families | AT5G61790 | 35.768 | 1.15e-64 | 214 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma12g00453 | K08057 | - | gmx:100802428 | 767.689 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma12g00453 | 12 | 3707059 | 3713457 | Gma12g00453 | 12 | 3707059 | 3713457 | ECH | |
| Gma12g00453 | 12 | 3707059 | 3713457 | Gma11g01153 | 11 | 9707250 | 9713742 | GST |