Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma11g01153 | ATGGCCAATGGTAACAACATTAGTCATTTCTTCAAGCTCTTGCTTTTCCTTCTAACTTTCCACTCTTGTCTCGCTGAGATTTTCTTCCAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGCTATCCGATTGGAAAAGGAGCGAGGGAAAAGCGGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAATGACGCCAAGCATTTCGCCATATCTGCAAAGATACCGGAGCTTAGTAACAAGGACAGAACCCTGGTGGTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAGCTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACTCCTTACAGTTTGATGTTTGGACCAGACTTATGTGGTTCACAGACAAAGAAGCTCCATCTTATACTATCATACCAGGGGCAGAATTACCCGATTAGAAAAGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACATGGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCGTCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGACGAAGATGATGGACTATGGAAGCCCCCAAAGATTCCTAATCCAGCGTACAAAGGACCATGGAAATGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTCGAGGATGATCCTGATCTGTATGTTCTCAAGCCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAGTTGTGGATGAATATATGGCTAGCAACAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCAGGAAGACGAGGAGGCACGAAGAGCAAGAGAAGAGGGTGAAAGAAGGAGGAAGGAGAGGGATCATAAATATGGAAAAAGGAGGCATCGTCGAAGGCCGGATCCCCATGATATGGAGGATTACCATGATGAACTTTGA | 1260 | 0.4333 | MANGNNISHFFKLLLFLLTFHSCLAEIFFQERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPELSNKDRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGSQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYMDWDILPPRKIKDVKAKKPSDWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPVDWDDEDDGLWKPPKIPNPAYKGPWKCKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQVVDEYMASNREAEKEAFEEAEKERRAQEDEEARRAREEGERRRKERDHKYGKRRHRRRPDPHDMEDYHDEL | 419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma11g01153 | 419 | Pfam | Calreticulin family | 266 | 339 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | Pfam | Calreticulin family | 29 | 264 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | Gene3D | Calreticulin/calnexin, P domain | 200 | 320 | IPR009033 | GO:0005509|GO:0005515 | |
| Gma11g01153 | 419 | MobiDBLite | consensus disorder prediction | 357 | 419 | - | - | |
| Gma11g01153 | 419 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 21 | 224 | IPR013320 | - | |
| Gma11g01153 | 419 | MobiDBLite | consensus disorder prediction | 249 | 269 | - | - | |
| Gma11g01153 | 419 | PIRSF | Calreticulin | 5 | 418 | IPR009169 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | MobiDBLite | consensus disorder prediction | 225 | 272 | - | - | |
| Gma11g01153 | 419 | PANTHER | CALRETICULIN-3 | 9 | 419 | - | - | |
| Gma11g01153 | 419 | ProSitePatterns | Calreticulin family signature 1. | 104 | 119 | IPR018124 | GO:0005509 | |
| Gma11g01153 | 419 | Gene3D | - | 26 | 381 | - | - | |
| Gma11g01153 | 419 | MobiDBLite | consensus disorder prediction | 357 | 393 | - | - | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 106 | 124 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 132 | 148 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 221 | 234 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 249 | 271 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 287 | 306 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PRINTS | Calreticulin signature | 320 | 340 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | PANTHER | CALRETICULIN AND CALNEXIN | 9 | 419 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Gma11g01153 | 419 | MobiDBLite | consensus disorder prediction | 225 | 239 | - | - | |
| Gma11g01153 | 419 | SUPERFAMILY | P-domain of calnexin/calreticulin | 207 | 322 | IPR009033 | GO:0005509|GO:0005515 | |
| Gma11g01153 | 419 | ProSitePatterns | Calreticulin family signature 2. | 136 | 144 | IPR018124 | GO:0005509 | |
| Gma11g01153 | 419 | Coils | Coil | 357 | 395 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma11g01153 | Gma-Chr11 | 9707250 | 9713742 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma11g01153 | 9 | 347 | Miscellaneous Gene Families | AT5G61790 | 35.678 | 6.40e-66 | 218 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma11g01153 | K08057 | - | gmx:100776524 | 798.119 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma11g01153 | 11 | 9707250 | 9713742 | Gma11g01153 | 11 | 9707250 | 9713742 | ECH | |
| Gma12g00453 | 12 | 3707059 | 3713457 | Gma11g01153 | 11 | 9707250 | 9713742 | GST |