Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00429 ATGACAAACGCACACGGTGGCGCCATGTTAGTAGAGCATAAAACAAACAGCAACAGCGTACACAGACAAAAGTTCGGAGCCTTGTTGCACTCCGAAACGACGTCGCTTTACACCTCCAACCACGACGACGATGAATTCTCCTCCCATAATAACCAACGGCACAGCAGCAACAATGCCTCTCCCTACATCATGTCCCCATGGAACTACCAACCTAATGGCAATAACAATTCTTCTTCTTCTCCTTTCAATAAATCTCCGTGGCTATTGCCTTCTTCGCCGGCGATAAACCTCTTCCACCACCACGATAACGACCTCCCGGAAAACGGCCTCATTGGATCCCTCGTCCGCAAGGATGGCCACATATATTCCCTCGCCGTTTCCGGCAACTTGCTATACACCGGCTCTGACAGCAAGAACATAAGAGTGTGGAAGGATCTCAAAGACTTCACGGGATTCAAATCAAGCAGCGGATTGGTGAAAACGATTGTTATTTCCGGCGGGAAAATCTTCACCGGCCACCAAGACGGGAAGATCAGAGTCTGGAAGGTTTCGTCGAAGAATCCGAGCAACCATAAACGCATCGGGAGCTTGCCGACGTTCAAAGAGTACGTGAAGAGTTCGATGAATCCGAAGAACTACGTCGAGGTTCGGCGGCACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGTCTGGACGAGGAGGAAGGCTTGTTGTACTCGGGGTCGTGGGACAAGACGCTCAAGGTGTGGCGCGTGGCGGATTCAAAGTGCTTGGAGTCGATTAGCGCGCACGACGACGCCGTGAACGCGGTGGCGGCGGCGTTCGGGGGTTGCGTGTTGACGGGCTCCGCGGACGGGACGGTGAAGATGTGGAGGAGGGAGAACCAGGGGAAGAAGTTCAAGCACGTTTTAGACCGTGTTTTGCTGAAGCGGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTTTAGCTACGGTGGTTTATTGCGGTTCTTCTGACGGGTTGGTCAATTTCTGGGAGCGTGACCAGAAAGGTGGATTCTTGCACGGCGGAGTTTTGAGGGGGCATAAGCTTGCGGTTCTCTGTCTGGCCGCGGCGGGGAACCTTGTCTTCAGTGGCTCTGCGGATAAGAATGTTTGCGTGTGGAAGCGTGACGAAAATGGCTTCCACACTTGCCATTCGGTTCTGACGGGGCACAGTGGTCCTGTTAAGTGTATCGCCGTAGAGGAAGCAGAACCGCCGCCGGAGGGTCGTTGCGAGAAGGGGAACCTGCGGTGGATTGTGTACACCGGGAGCTTGGACAAGTCGGTGAAGGTGTGGTGCGTGTCTGAACACGCGCCGGACGCGAGCGTGTTCCAGAGCTGGGCCACACCGTATCATTCCTCCTCCTCCGCAGTTGGATTCAGTTATTCCTCGCCGGGGAAAATTAGTGTTAATTCATCACCGGCGTGGAGTTATTCGTCGCCGAGAAGAATTGGTGTTAGTTCCGTCACAGCAGGATTCAGCTATTCCTCACCCACTTCATTCGGGCTCAATTCATCTTCCTCCCCAGCAGGAGGAATGATTTATTCTTCGCCCAGAAAAATCAATGTTAGCAACAACAGTGGAaatagcaaccgcaatgGCTTGGTCATTTGA 1653 0.5324 MTNAHGGAMLVEHKTNSNSVHRQKFGALLHSETTSLYTSNHDDDEFSSHNNQRHSSNNASPYIMSPWNYQPNGNNNSSSSPFNKSPWLLPSSPAINLFHHHDNDLPENGLIGSLVRKDGHIYSLAVSGNLLYTGSDSKNIRVWKDLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPSNHKRIGSLPTFKEYVKSSMNPKNYVEVRRHRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTLKVWRVADSKCLESISAHDDAVNAVAAAFGGCVLTGSADGTVKMWRRENQGKKFKHVLDRVLLKRENAVTALAVNRLATVVYCGSSDGLVNFWERDQKGGFLHGGVLRGHKLAVLCLAAAGNLVFSGSADKNVCVWKRDENGFHTCHSVLTGHSGPVKCIAVEEAEPPPEGRCEKGNLRWIVYTGSLDKSVKVWCVSEHAPDASVFQSWATPYHSSSSAVGFSYSSPGKISVNSSPAWSYSSPRRIGVSSVTAGFSYSSPTSFGLNSSSSPAGGMIYSSPRKINVSNNSGNSNRNGLVI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00429 550 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 462 - -
Gma12g00429 550 MobiDBLite consensus disorder prediction 39 84 - -
Gma12g00429 550 SMART WD40_4 351 388 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 259 297 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 107 144 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 306 345 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 145 182 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 394 446 IPR001680 GO:0005515
Gma12g00429 550 SMART WD40_4 221 256 IPR001680 GO:0005515
Gma12g00429 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515
Gma12g00429 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 388 IPR001680 GO:0005515
Gma12g00429 550 Gene3D - 218 352 IPR015943 GO:0005515
Gma12g00429 550 SUPERFAMILY WD40 repeat-like 110 475 IPR036322 GO:0005515
Gma12g00429 550 MobiDBLite consensus disorder prediction 51 84 - -
Gma12g00429 550 Gene3D - 95 217 IPR015943 GO:0005515
Gma12g00429 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 257 - -
Gma12g00429 550 Gene3D - 357 546 IPR015943 GO:0005515
Gma12g00429 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 296 IPR001680 GO:0005515
Gma12g00429 550 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Gma12g00429 550 PRINTS G protein beta WD-40 repeat signature 169 183 IPR020472 -
Gma12g00429 550 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Gma12g00429 550 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 462 IPR045182 -
Gma12g00429 550 Pfam WD domain, G-beta repeat 118 144 IPR001680 GO:0005515
Gma12g00429 550 Pfam WD domain, G-beta repeat 356 388 IPR001680 GO:0005515
Gma12g00429 550 Pfam WD domain, G-beta repeat 227 255 IPR001680 GO:0005515
Gma12g00429 550 Pfam WD domain, G-beta repeat 397 445 IPR001680 GO:0005515
Gma12g00429 550 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00429 Gma-Chr12 3521125 3524968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00429 131 494 Acyl Lipid Metabolism Gene Families AT3G18860 26.542 1.73e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00429 - - gsj:114379287 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00429 12 3521125 3524968 Gma12g00429 12 3521125 3524968 ECH
Gma12g00429 12 3521125 3524968 Gma11g01126 11 9501937 9512001 GST