Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00411 ATGGACATTGATTTCAAAGAATACCAGTTGCGCTGCGAGCTTCGCGGCCACGAAGACGACGTTCGCGGAATATGCGTGTGCGGCAGCAAGGGTATAGCGACTTCGTCAAGGGACCGGACCGTTAGGTTGTGGTCTTTGGACGACAACCGCAGGTTCGCGAGTTCCAAGATTCTTTTGGGCCACACAAGCTTCGTGGGTCCCTTGGCATGGATTCCTCCGAATTCGGATCTCCCGCATGGTGGGGTCGTGTCTGGCGGCATGGACACACTCGTGTGTGTCTGGGACTTGAAGACTGGTGAGAAGGTTCACACTCTCAAGGGCCATCAGCTGCAGGTCACTGGCATTGCCTTTGATGATGGGGATGTTGTCTCCTCTTCTGTTGATTGTACCTTAAAACGGTGGAGGAATGGACAATCTGTAGAGTCGTGGGAGGCTCATAAGGCACCGGTCCAAACTGTCATAAAGCTGCCCTCAGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGCTTGCACACCTTTCAAGGACATTCAGATACAGTTCGAGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTTTCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGCTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGTGAAGACCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCGTTTGGGATGCAAAATTTATGGAAAATGGTGATATTGTGACAGCATGTTCAGATGGAGTAGTACGCATTTGGACCATAGATCAGGATAATGTTGCTGACCAGCTAGAGCTTGAGTTATACACTTCGCTACTTTCTGAATACAAATCTAGTAGAAAGAGGGTTGGAGGATTGAAACTGGAAGAGTTACCAGGCTTGGAGGCACTGAAGATCCCAGGAACTACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACATGAAAGAACAAAAGTGGGATAAAATTGGTGAAGTAGTTGATGGACCAGAGGAATCAAATCGTCAATTTTTTGACGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAACAATATTACTTTTGATGCTTCATTTCGTGATCCCTTCACTGGCTCCCATGCTTATGTACCAGGACAACCTTCACGCATGTCTGATATATCTGCAAAACCTACTTTCAAGCATATTCCTAAGAAAGGAATGCTTGTTTTCGATGCAGCTCAGTTTGACGGGATCCTTAAAAAGATTACTGAGTTCAATAATGCTTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGATTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGCTTTGTTACTGAATCTGCTTCGGTCGTGGCCAATCGCAATGATTTTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCTGATGGGGCTGTTTTACTTCACAAGCATTTTGAAGCAGAAAATGACATACTAATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATCCCTGCAAATCTGTTGACCAGCATTCGTGTTGTAACTAATCTCTTCAGGAATTTGTGCTACTACAACTGGTTGCAAAAACATCGTAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAGAATTTGCAGTTGTCATACTCTACCTTGTTACTAAATTATGCGGTGCTATTAATTGAAACAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGCCGAGGATGAAAATGTTGAAGTCGACCCCAAATTTCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAAGGTCTTGTCAGAAAAACAGCACTGGATTTTGATGTTGTGAACATTGCAAAAGCAGCCAAGGGTTCTAAGGAAGCCAAGATTGCTGAAGTCGGATCTGACATTGAGCTGTTAACAAAGCAGAGCTGA 2271 0.4298 MDIDFKEYQLRCELRGHEDDVRGICVCGSKGIATSSRDRTVRLWSLDDNRRFASSKILLGHTSFVGPLAWIPPNSDLPHGGVVSGGMDTLVCVWDLKTGEKVHTLKGHQLQVTGIAFDDGDVVSSSVDCTLKRWRNGQSVESWEAHKAPVQTVIKLPSGELVTGSSDTTLKLWRGKTCLHTFQGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTIDQDNVADQLELELYTSLLSEYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNITFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNALQSDQEKQNLSLTELNDSRLGAIVKILKDTSHYHSSKFADSDIALLLNLLRSWPIAMIFPVIDIVRMLVLHPDGAVLLHKHFEAENDILMEVIKKVTVNPTIPANLLTSIRVVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIETKDQEGQSQVLSAALEIAEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKAAKGSKEAKIAEVGSDIELLTKQS 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00411 756 SMART WD40_4 175 213 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 98 135 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 7 45 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 136 174 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 254 291 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 51 95 IPR001680 GO:0005515
Gma12g00411 756 SMART WD40_4 215 253 IPR001680 GO:0005515
Gma12g00411 756 Gene3D - 375 450 IPR038122 -
Gma12g00411 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 212 IPR001680 GO:0005515
Gma12g00411 756 Gene3D - 4 307 IPR015943 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Gma12g00411 756 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Gma12g00411 756 CDD WD40 10 290 - -
Gma12g00411 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 104 IPR001680 GO:0005515
Gma12g00411 756 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Gma12g00411 756 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Gma12g00411 756 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Gma12g00411 756 Gene3D - 481 752 IPR011989 -
Gma12g00411 756 ProSiteProfiles PUL domain profile. 481 752 IPR013535 -
Gma12g00411 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Gma12g00411 756 ProSiteProfiles PFU domain profile. 357 452 IPR015155 -
Gma12g00411 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 173 IPR001680 GO:0005515
Gma12g00411 756 Pfam PFU (PLAA family ubiquitin binding) 337 445 IPR015155 -
Gma12g00411 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Gma12g00411 756 SUPERFAMILY WD40 repeat-like 5 306 IPR036322 GO:0005515
Gma12g00411 756 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Gma12g00411 756 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 753 - -
Gma12g00411 756 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 753 - -
Gma12g00411 756 Pfam PUL domain 483 748 IPR013535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00411 Gma-Chr12 3376329 3388540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00411 1 755 Acyl Lipid Metabolism Gene Families AT3G18860 71.240 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00411 K14018 - gmx:100816481 1491.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00411 12 3376329 3388540 Gma12g00411 12 3376329 3388540 ECH
Gma12g00411 12 3376329 3388540 Gma11g01105 11 9331438 9342942 GST