Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01105 ATGGACATTGATTTCAAAGAATACCAATTGCGCTGCGAGCTTCGCGGACACGAAGACGACGTTCGCGGAATATGCGTGTGCGGCAGCGAGGGCATAGCGACGTCGTCGAGGGACCGAACCGTCAGGTTGTGGTCTCTGGACGACAGCCGCAAGTTCGTGAGTTCCAAGATTCTGTTGGGCCACACCAGCTTCGTGGGACCCTTGGCATGGATTCCTCCGAATTCGGAGTTCCCGCATGGTGGGGTCGTGTCTGGCGGCATGGACACACTCGTGTGTGTCTGGGACTTGAAGACCGGTGAGAAGGTTCACACTCTCAAGGGCCATCAGCTGCAGGTCACTGGCATTGCCTTTGATGATGGGGATGTTGTGTCCTCTTCTGTTGATTGTACCTTAAAACGGTGGAGGAATGGGCAATCTGTAGAGTGGTGGGAGGCTCATAAGGCACCAGTTCAAGCAGTTATAAAGCTGCCTTCAGGGGAGCTTGTTACTGGTTCAAGTGACTCTACTTTAAAGCTTTGGAGAGGAAAAACTTGCTTGCATACCTTTCAAGGACATTCAGATACAGTTCGATGCTTGTCTGTTATGTCTGGTCTTGGAATCCTATCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGCTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGACCATTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGTGTTTGGGATGCAAAATTTATGGAAAATGGTGATATTGTGACAGCATGCTCAGATGGAGTAGTACGCATTTGGACCGTAGATCAGGATAATGTTGCTGACCAGTTAGAGCTTGATTTATACACTTCGCAACTTTCTCAATACAAAGCTAGTAGAAAGAGGGTTGGAGGATTGAAACTGGAAGAGTTACCAGACTTGGAGGCACTGAAGATCCCAGCAGGAACTACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGGTGGAACATGAAAGAACAAAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCAGAGGAATCAAATCGCCAATTTTTTGATGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAACAATACTACTTTTGATGCTTCATTTCGCGATCCCTTCACTGGCTCCCATGCTTATGTACCAGGACAACCTTCACGTATGTCTGATATTTCTGCGAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTCGATGCAGCTCAGTTTGACGGGATCCTTAAAAAGATTTCTGAGTTCAATTGTGCTTTACAGTCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGCCTTGTTACTGAATCTGCTTCGATCATGGCCTATGGCAATGATATTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCTGATGGGGCTATTTTACTTCAGAAGCATTTTGAAGCAGAAAATGACATACTAATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATTCCTGCAAATTTGTTGACCAGCATTCGTGCTGTAACTAATCTCTTCAGGAATTTGTGCTACTACAACTGGTTGCAAAAACATCGAAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAGAATTTGCAGTTGTCATACTCTACCTTGTTACTAAACTATGCTGTGCTATTGATTGAAACAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCGGCAGCTCTTGAGATTGGTGAGGATGAAAATGTTGAAGTCGACCCCAAATTTCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAAGGTCTTGTCAGAAAAACAGCACTGGATTTTGATGTTGTGAACATTGCAAAAGCAGCCAAGGGTTCTAAGGAAGGCAAGATTGCTGAAATCGGATCTGACATTGAGCTGTTAACAAAGCGGGGCTGA 2274 0.4318 MDIDFKEYQLRCELRGHEDDVRGICVCGSEGIATSSRDRTVRLWSLDDSRKFVSSKILLGHTSFVGPLAWIPPNSEFPHGGVVSGGMDTLVCVWDLKTGEKVHTLKGHQLQVTGIAFDDGDVVSSSVDCTLKRWRNGQSVEWWEAHKAPVQAVIKLPSGELVTGSSDSTLKLWRGKTCLHTFQGHSDTVRCLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDHFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQDNVADQLELDLYTSQLSQYKASRKRVGGLKLEELPDLEALKIPAGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNTTFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDAAQFDGILKKISEFNCALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIALLLNLLRSWPMAMIFPVIDIVRMLVLHPDGAILLQKHFEAENDILMEVIKKVTVNPTIPANLLTSIRAVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIETKDQEGQSQVLSAALEIGEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKAAKGSKEGKIAEIGSDIELLTKRG 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01105 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 212 IPR001680 GO:0005515
Gma11g01105 757 Pfam PFU (PLAA family ubiquitin binding) 339 446 IPR015155 -
Gma11g01105 757 Pfam PUL domain 484 749 IPR013535 -
Gma11g01105 757 Gene3D - 376 450 IPR038122 -
Gma11g01105 757 CDD WD40 10 290 - -
Gma11g01105 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 104 IPR001680 GO:0005515
Gma11g01105 757 Gene3D - 4 308 IPR015943 GO:0005515
Gma11g01105 757 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Gma11g01105 757 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Gma11g01105 757 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Gma11g01105 757 ProSiteProfiles PUL domain profile. 482 753 IPR013535 -
Gma11g01105 757 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Gma11g01105 757 Pfam WD domain, G-beta repeat 144 173 IPR001680 GO:0005515
Gma11g01105 757 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Gma11g01105 757 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Gma11g01105 757 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Gma11g01105 757 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Gma11g01105 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 173 IPR001680 GO:0005515
Gma11g01105 757 ProSiteProfiles PFU domain profile. 358 453 IPR015155 -
Gma11g01105 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Gma11g01105 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Gma11g01105 757 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Gma11g01105 757 Gene3D - 482 753 IPR011989 -
Gma11g01105 757 SMART WD40_4 98 135 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 215 253 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 7 45 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 254 291 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 136 174 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 175 213 IPR001680 GO:0005515
Gma11g01105 757 SMART WD40_4 51 95 IPR001680 GO:0005515
Gma11g01105 757 SUPERFAMILY WD40 repeat-like 5 306 IPR036322 GO:0005515
Gma11g01105 757 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 754 - -
Gma11g01105 757 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01105 Gma-Chr11 9331438 9342942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01105 1 756 Acyl Lipid Metabolism Gene Families AT3G18860 71.146 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01105 K14018 - gmx:100805404 1514.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01105 11 9331438 9342942 Gma11g01105 11 9331438 9342942 ECH
Gma12g00411 12 3376329 3388540 Gma11g01105 11 9331438 9342942 GST