Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00365 ATGGCAACTGATGCTCTTGTGATTTCCAATGGCAATGGCAATGGCAATGCCAAGTCAGAGCTGCATCCGCAGAGGACTTACCAAGTAGTAGTGGTTGCAACCAGAGATATGGGCATTTCTAAGGATGCAAAACTGCCCTGGACATTACCCACTGAACTCAAATTTTTTGAGGAGATCACTACAACAACATCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGGAAAACATGGGAGAGCATCCCTCCTGAGAACAGGCCACTTCCTGATCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCAGAGAATGTTCTTATATGTGGAAGTATGGCTTCTGCTATGGAGCTGTTGGCTTCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTCTCACAGGAGGTGGAGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTATTTCAGACATGGTATTCATCTTTCCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGCGCGTGTAAGGAGTTCTCCACCAGAGTCCCTGGATCAGAATGCTGATCCATTTTTTTATAATAATTCAGACTCTTTCAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCCAAAATGGTTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCTCTTCTAACAACAAAGAAAGTATTTTGGCGAGGGGTAGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGACATTGGTTTGACAGAAAGGGAGAAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCTTGACATGCATGATCGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCCTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCAATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCAGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1581 0.4301 MATDALVISNGNGNGNAKSELHPQRTYQVVVVATRDMGISKDAKLPWTLPTELKFFEEITTTTSDPGKKNAVVMGRKTWESIPPENRPLPDRLNVVLTRSGSFDIATAENVLICGSMASAMELLASSPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTNVFQTWYSSFPLVEDNLRYSFTTYARVRSSPPESLDQNADPFFYNNSDSFKFEVKKFSFLPKMVYERHEEFKYLRLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKALQEKGIHIWDGNASRDIGLTEREKGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00365 526 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 PRINTS Thymidylate synthase family signature 377 396 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 PRINTS Thymidylate synthase family signature 421 447 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 PRINTS Thymidylate synthase family signature 403 418 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 PRINTS Thymidylate synthase family signature 459 476 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 SUPERFAMILY Dihydrofolate reductase-like 24 203 IPR024072 -
Gma12g00365 526 CDD TS_Pyrimidine_HMase 250 479 IPR023451 -
Gma12g00365 526 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g00365 526 PANTHER THYMIDYLATE SYNTHASE 1 1 526 IPR045097 GO:0016741
Gma12g00365 526 PIRSF DHFR-TS 11 526 IPR012262 GO:0004146|GO:0004799|GO:0006730
Gma12g00365 526 CDD DHFR 31 201 IPR001796 GO:0004146|GO:0046654
Gma12g00365 526 Pfam Dihydrofolate reductase 29 203 IPR001796 GO:0004146|GO:0046654
Gma12g00365 526 Hamap Thymidylate synthase [thyA]. 247 526 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 203 IPR001796 GO:0004146|GO:0046654
Gma12g00365 526 Pfam Thymidylate synthase 249 526 IPR023451 -
Gma12g00365 526 TIGRFAM thym_sym: thymidylate synthase 249 526 IPR000398 GO:0004799|GO:0006231
Gma12g00365 526 ProSitePatterns Thymidylate synthase active site. 388 416 IPR020940 GO:0004799|GO:0006231
Gma12g00365 526 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 229 526 IPR036926 -
Gma12g00365 526 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 526 IPR036926 -
Gma12g00365 526 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 526 - -
Gma12g00365 526 Gene3D Dihydrofolate Reductase, subunit A 11 204 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00365 Gma-Chr12 3031619 3036516 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00365 K13998 - gmx:100788658 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00365 12 3031619 3036516 Gma12g00365 12 3031619 3036516 ECH
Gma12g00365 12 3031619 3036516 Gma11g01051 11 8936871 8940441 GST