Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00333 ATGGCTCTCAACCTCACACCTTCTTCCTACTTTCACCCTTTCATTTCACACCAAATTCACTTTCATACTCTTTCAAAACCTTTCTTTCTCTCACACTCCAAAACCTCAACCTCGTCACTCTCCAAAACCCTATTATGTCTTTGTGCATCACCATCCAACACCTCCCACCCTTCACCAACCCCCATTTTCCTCCCATATCTTCAACAACAAGAACCAGAAAATCGTGAAAAGGAGGGAATAGAAACAATAGTAGAAGAACAACAAGAACAAGAACATGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTCGGTTTTCTTCCCAAGACCCTGGAAAAGAAGGAAAATTATCCCTTCAGAAGAACCGTCGCATCTCATGGCACCTTGCTTCTGACCTTGTTGAAGAAGAGCCTGAAAAGGGTTTGGTTGAAGAGAAGGAAGAAACAGCGTTTCAGAAGAAGAAGGTtttgcctttgcctttgcctttgcctttgcctGAGGGCATTGTGGGAGAGATCGTTCAGCTTGCAAGGAACTTGACACAAAATCTAACTCTGGAGGAGGCTTTGGCTGAGTATGAAGGAAGGGTTAGTGAGAAAGATTGTTGGGAGGTTTTGAAATTACTTGGGGAGGAGCAACTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTTGTTACACCTCGGGCTTGCACTGTGTTGTTTCCATTGTTGGGGAAAGCAAGGATGGGTGATAAGTTGATGCTTTTGTTCACAAATTTGCCATCCGGCAGGGAGTTCAGAGATGTTCATGTTTACAATGCCGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTGTGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCAGATAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATCGTTATGAGAAAACTTGGCCATAGTGCAAAGGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTCATCATCCTATCTGAACTGGAGAAGAAAGGGGTTTCTTCAAATGCAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAATCGTGTAGAAGAAGCTGAAGGCCTCTTTATTGAGATGAAAACTAAAGGGATTAAGCACACTGAAGCTACGTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAACCTGAGATTGTAGAGAAGCTGATGGCTGAAATGCAGGATGCTGGCTTGAAGCCAAATGCCAAATCATATACTTGTCTAATCAGTGCATATGGGAAGCAGAAAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGACGGTATTAAACCAACTTCACATTCTTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGCATTAAACCTTCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGTGCCGGTGACACCCAAACATTGATGAAAATATGGAAGTTGATGAGGAGGTACAAGGTTGAAGGAACACGTGTCACATTCAACACTCTTGTTGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTAAGTTTGCAAATGTTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATATGCACGAGGAGGGCAACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGCTCATAACTTGAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCCTTTCTCCGTGTTCGAGATTTTAGCCAGGCATTTTTTTATCACCAGGAGATGGTCAAGAGTGGGCAGGTGATTGATTTCAATTCTTACCAGAAGCTTCGGGCGATTCTGGATGCTAAAGCTGCAATTAAAAACCGAAAGGATAGGAGATCCTTGATTGGTGTAGTTAGAAATAAGATGGGTGTTGTGAAACCGAAGAGAAAAAAGGATGAGTTATGGAAGTACAGGAAAAGACATGTTAAACAAAAGTAG 2148 0.4097 MALNLTPSSYFHPFISHQIHFHTLSKPFFLSHSKTSTSSLSKTLLCLCASPSNTSHPSPTPIFLPYLQQQEPENREKEGIETIVEEQQEQEHDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQKNRRISWHLASDLVEEEPEKGLVEEKEETAFQKKKVLPLPLPLPLPEGIVGEIVQLARNLTQNLTLEEALAEYEGRVSEKDCWEVLKLLGEEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMGDKLMLLFTNLPSGREFRDVHVYNAAISGLLSSGRCEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVIDFNSYQKLRAILDAKAAIKNRKDRRSLIGVVRNKMGVVKPKRKKDELWKYRKRHVKQK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00333 715 PANTHER OS03G0856100 PROTEIN 11 714 - -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Gma12g00333 715 Gene3D Tetratricopeptide repeat domain 171 323 IPR011990 GO:0005515
Gma12g00333 715 Gene3D Tetratricopeptide repeat domain 441 550 IPR011990 GO:0005515
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 482 IPR002885 -
Gma12g00333 715 Pfam PPR repeat 348 374 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Gma12g00333 715 Pfam PPR repeat family 587 634 IPR002885 -
Gma12g00333 715 Pfam PPR repeat family 270 314 IPR002885 -
Gma12g00333 715 Pfam PPR repeat family 377 423 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 485 518 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 521 551 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 379 410 IPR002885 -
Gma12g00333 715 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Gma12g00333 715 PANTHER - 11 714 - -
Gma12g00333 715 Gene3D Tetratricopeptide repeat domain 324 440 IPR011990 GO:0005515
Gma12g00333 715 Pfam Pentatricopeptide repeat domain 507 561 IPR002885 -
Gma12g00333 715 Pfam Pentatricopeptide repeat domain 434 494 IPR002885 -
Gma12g00333 715 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Gma12g00333 715 Gene3D Tetratricopeptide repeat domain 564 681 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00333 Gma-Chr12 2758610 2761432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00333 379 665 Miscellaneous Gene Families AT4G11690 25.784 9.86e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00333 - - gmx:100775643 1362.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00333 12 2758610 2761432 Gma11g01016 11 8618751 8621759 GST