Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01016 ATGGCTCTCAACCTCACACCTTCTTCTTACTTTCATCACCCTTTCATTTCACACCAAATTCACTTTCATACACTTTCAAAACCTTTCTCTCTCACACACTCCAAAACCTCAACCTTCTCAGTCTCCAAAACCCTATGTCTTTGTGCATCACCATCCAACACCCCCATTTTCCTCCCATATCTCCGACAACTAGAACCAGAAAATCATGAACAAGGAGAGGGCATAGAAACAATAGTAGAAGAACAAGAGTATGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTCGGTTTTCTTCCCAAGACCCTGGAAAAGAAGGAAAATTGTCCCTTCAGAAGAACCGTCGCATTTCATGGCACCTTGCTTCTGACCTTATTGAAGAAGAAGAAGAACCTGAAATGGGTTTGATTGAAGAGAAGGAAAAAACGGTGTTTCAGAAGAAGGCTTTGCCTTTGCCTGAGGGCATTGTGGGAGAGATTGTTCAGCTTGCAAGGAACTTGCCACAAAATCTAACTCTGGAGGAGGCTTTGGCTGAGTATGAAGGAAGAAGGGTTAGTGAGAAAGAGTGTTGGGAGGTTTTGAAATTACTTGGGGATGAGCAACTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCGTCACTTGTTACTCCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAAGCAAAGATGGGTGATAAGTTGATGGTTTTGTTCACAAACTTGCCATCTAGCAGGGAGTTTAGAGATTCTCATGTTTATAATGCTGCAATTTCAGGCCTTCTTTCTAGTGCCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCAGATAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATCGTTATGAGAAAACTTGGCCATAGTGCAAAGGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTCATCATCCTATCTGAACTGGAGAAGAAAGGGGTTTCTTCAAATACAATTGTGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTCTTTGTTGAGATGAAAACTAAAGGGATTAAGCCCACTGAAGCTACATTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAACCTGAGATTGTAGAGAAGCTGATGGCTGAAATGCAGGAAACTGGCTTGAAGCCAAATGCCAAATCATATACTTGTATAATCAGTGCATATGGGAAGCAGAAAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGACGGTATTAAACCCACTTCACATTCTTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGCATTAAACCTTCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGTGCCGGTGACACCCAAACATTGATGAAAATATGGAAGTTGATGAGGAGGGAAAAAGTTGAAGGAACACGTGTCACATTCAACACTCTTGTTGATGGTTTTGCTAAACATGGTTACTACAAGGAAGCAAGAGATGTAATATCTAAATTTGCAAATGTTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGCTCATAACTTGAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCATTTCTCCGTGTTCGAGATTTTAGCCAGGCATTTTTTTATCACCAGGAGATGGTCAAGAGTGGGCAGGTGATGGATGTCGATTCATACCAGAAGCTTCGGGCAGTTCTGGATGCTAAAGCTGCAATTAAAAACAGAAAGGATAGGAGATCCATGATTGGTGTAGTTAGAAATAAGATGGGCGTTGTGAAACCGAAGAGAAAAAAGGATGAGTTATGGAAGTACAGGAAAAGACATGTGAAACAAAAGTAG 2112 0.4124 MALNLTPSSYFHHPFISHQIHFHTLSKPFSLTHSKTSTFSVSKTLCLCASPSNTPIFLPYLRQLEPENHEQGEGIETIVEEQEYDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQKNRRISWHLASDLIEEEEEPEMGLIEEKEKTVFQKKALPLPEGIVGEIVQLARNLPQNLTLEEALAEYEGRRVSEKECWEVLKLLGDEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKAKMGDKLMVLFTNLPSSREFRDSHVYNAAISGLLSSARYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMDVDSYQKLRAVLDAKAAIKNRKDRRSMIGVVRNKMGVVKPKRKKDELWKYRKRHVKQK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01016 703 Pfam PPR repeat 336 362 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 509 539 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 262 294 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Gma11g01016 703 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Gma11g01016 703 Gene3D Tetratricopeptide repeat domain 430 531 IPR011990 GO:0005515
Gma11g01016 703 Gene3D Tetratricopeptide repeat domain 159 308 IPR011990 GO:0005515
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Gma11g01016 703 Pfam Pentatricopeptide repeat domain 495 550 IPR002885 -
Gma11g01016 703 Pfam Pentatricopeptide repeat domain 422 482 IPR002885 -
Gma11g01016 703 Gene3D Tetratricopeptide repeat domain 309 429 IPR011990 GO:0005515
Gma11g01016 703 Pfam PPR repeat family 259 302 IPR002885 -
Gma11g01016 703 Pfam PPR repeat family 575 622 IPR002885 -
Gma11g01016 703 Pfam PPR repeat family 365 411 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Gma11g01016 703 PANTHER - 14 702 - -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Gma11g01016 703 PANTHER OS03G0856100 PROTEIN 14 702 - -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Gma11g01016 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 470 IPR002885 -
Gma11g01016 703 Gene3D Tetratricopeptide repeat domain 532 703 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01016 Gma-Chr11 8618751 8621759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01016 253 657 Miscellaneous Gene Families AT4G11690 24.272 1.07e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01016 - - gmx:100788628 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00333 12 2758610 2761432 Gma11g01016 11 8618751 8621759 GST