Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00289 ATGCCAATGCCAATGCCATCTCCCTCATTCCAACCCCTCAAATCCCCCCACAACCTCTGCATCGTCAAGTCCCTCCTCTCCAACCCTTCCCTCTCCGACGCCGTTTCCTCTCTCGACCTCTTGCGCCTCAAGGGCATTCGCTTACCCTCTCACGTTCTCGCCACCCTCTTGCGCCACTGCTCCAAAACCAGGTCTTACCGAGAGGGCAAATTCATTCACCTCCACTTGAAGCTCACTGGTTTCAAGCGCCCCCCAACGCTTCTGGCCAACCACTTGATCTCAATGTATTTCAGCTGCGGCGATTTCGCTCAGGCACGCAAGGTGTTCGACAAAATGGACGACAGAAATTTGTACACCTGGAACAATATGATTTCTGGGTATGCCAAACTGGGCTTGATGAAGCAAGCTAGGAGCTTCTTCTACCAAATGCCTCACAAGGATCATGTATCTTGGAATTCAATGGTGGCTGGATATGCACACAAGGGCAGATTTGCTGAGGCTTTGAGATTTTATGGACAGTTGAGGAGATTGTCTGTGGGGTATAATGAGTTTAGCTTTGCTAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTGGTTGTTGGGTTTTTGTCCAATGTAGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGTGGGAAGATGGAAAATGCGAGGAGATTATTTGATGACATGCCTGTGAGGGATGTTCGTGCGTGGACGACATTAGTTTCGGGTTATGCTGTGTGGGGGGACATGGAATCGGGTGCTGAGTTGTTTAGTCAGATGCCTAAAAGCGATTCCTGTTCATGGACATCTTTGATTAGAGGTTATGCAAGAAATGGTATGGGTTATGAAGCACTTGGAGTGTTTAAACAAATGATCAAGCATCAAGTTAGACCTGATCAATTTACACTCAGTACTTGCCTCTTTGCTTGTGCCACTATTGCTTCACTGAAACATGGTAGACAAATACATGCTTTTTTGGTGCTGAATAACATCAAACCAAATACTATTGTCGTTTGTGCTATTGTTAACATGTATTCGAAATGTGGAAGCTTGGAAACTGCCAGGCGAGTCTTTAATTTCATTGGAAATAAGCAGGATGTAGTGTTGTGGAACACGATGATATTGGCACTGGCTCACTATGGGTATGGTATAGAAGCAATTATGATGCTATATAATATGCTAAAAATAGGAGTGAAGCCAAATAAGGGCACTTTTGTTGGCATTCTAAATGCTTGTTGTCATTCTGGTCTTGTTCAGGAAGGGCTTCAGTTATTCAAGTCCATGACTAGTGAGCATGGTGTCGTCCCTGACCAAGAACACTATACACGCTTAGCTAATCTTTTGGGTCAAGCTAGATGTTTTAATGAATCAGTGAAGGATCTGCAGATGATGGATTGTAAGCCAGGTGACCATGTTTGTAATTCTTCGATTGGTGTATGTAGAATGCATGGAAATATAGATCATGGGGCAGAGGTAGCTGCTTTCCTTATTAAATTGCAGCCACAATCTTCTGCTGCCTACGAATTACTTTCAAGGACATATGCTGCACTTGGGAAATGGGAATTGGTTGAGAAAAATAAGACATATTTTGGATGA 1641 0.4363 MPMPMPSPSFQPLKSPHNLCIVKSLLSNPSLSDAVSSLDLLRLKGIRLPSHVLATLLRHCSKTRSYREGKFIHLHLKLTGFKRPPTLLANHLISMYFSCGDFAQARKVFDKMDDRNLYTWNNMISGYAKLGLMKQARSFFYQMPHKDHVSWNSMVAGYAHKGRFAEALRFYGQLRRLSVGYNEFSFASVLIVSVKLKDFELCRQIHGQVLVVGFLSNVVISSLIVDAYAKCGKMENARRLFDDMPVRDVRAWTTLVSGYAVWGDMESGAELFSQMPKSDSCSWTSLIRGYARNGMGYEALGVFKQMIKHQVRPDQFTLSTCLFACATIASLKHGRQIHAFLVLNNIKPNTIVVCAIVNMYSKCGSLETARRVFNFIGNKQDVVLWNTMILALAHYGYGIEAIMMLYNMLKIGVKPNKGTFVGILNACCHSGLVQEGLQLFKSMTSEHGVVPDQEHYTRLANLLGQARCFNESVKDLQMMDCKPGDHVCNSSIGVCRMHGNIDHGAEVAAFLIKLQPQSSAAYELLSRTYAALGKWELVEKNKTYFG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00289 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 451 IPR002885 -
Gma12g00289 546 Gene3D Tetratricopeptide repeat domain 377 544 IPR011990 GO:0005515
Gma12g00289 546 Gene3D Tetratricopeptide repeat domain 21 179 IPR011990 GO:0005515
Gma12g00289 546 Gene3D Tetratricopeptide repeat domain 278 343 IPR011990 GO:0005515
Gma12g00289 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Gma12g00289 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 143 541 - -
Gma12g00289 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 276 - -
Gma12g00289 546 Gene3D Tetratricopeptide repeat domain 193 277 IPR011990 GO:0005515
Gma12g00289 546 SUPERFAMILY TPR-like 102 536 IPR011990 GO:0005515
Gma12g00289 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Gma12g00289 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 224 249 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 90 117 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 118 148 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 251 279 IPR002885 -
Gma12g00289 546 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Gma12g00289 546 Pfam PPR repeat family 381 429 IPR002885 -
Gma12g00289 546 Pfam PPR repeat family 279 326 IPR002885 -
Gma12g00289 546 Pfam PPR repeat 251 278 IPR002885 -
Gma12g00289 546 Pfam PPR repeat 90 116 IPR002885 -
Gma12g00289 546 Pfam PPR repeat 149 177 IPR002885 -
Gma12g00289 546 Pfam PPR repeat 222 247 IPR002885 -
Gma12g00289 546 Pfam PPR repeat 118 146 IPR002885 -
Gma12g00289 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00289 Gma-Chr12 2296338 2298307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00289 38 536 Glycoside Hydrolase AT3G49170 27.579 3.00e-61 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00289 - - gmx:100798659 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00289 12 2296338 2298307 Gma12g00289 12 2296338 2298307 ECH
Gma12g00289 12 2296338 2298307 Gma11g00961 11 8147537 8149177 GST