Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00961 ATGCCATCTCCCTCATTCCACAACCTCTGCATCGTCAAGTCCCTCCTCTCCAACCCTTCCCTCCCCGACGCCGTTTCTTCTCTTGACCTCTTGCGCCTCAAGGGCATTCGCTTACCCTCTCACGTTCTCGCCACCCTCCTGCGCCACTGCTCCAAAACCAGGTCTTACCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGTTTCAAACGCCCCCCAACGCTTCTTGCCAACCACTTGATCTCCATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCAAGGTGTTCGACAAAATGGACGACAGAAACTTGTACACCTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGCTTGCTGAAGCAAGCTAGGAGCTTCTTCTACCAAATGCCTCACAAGGATCATGTATCTTGGAATTCAATGGTGGCTGGGTATGCACACAAGGGCAGATTTGCTGAGGCTTTGAGATTTTATGGACACTTGAGGAGATTGTCTGTGGGGTATAATGAGTTTAGCTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTTATTGGATTTTCGTCCAATGTAGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGTGGGAAGTTGGAAGACGCGAGGAGATTATTTGATGGCATGCCTGTGAGGGATGTTCGTGCGTGGACGACATTGGTTTCGGGTTATGCCACATGGGGGGACATGAAATCGGGTGCTGAGTTGTTTAGTCAGATGCCTAAAAGCAATTCCTGTTCGTGGACATCTTTGATTAGAGGCTATGCAAGAAATGGTATGGGTTATGAAGCAATTGGGGTGTTTAGACAAATGATCAGGCATCAAGTTAGACCTGATCAATTTACACTCAGTACTTGCCTCTTTGCTTGCGCCACTATTGCTTCACTGAAGCATGGTAGACAAATACATGCTTTTTTGGTGCTGAATAACATCAAACCTAATAATGTTGTCGTTTGTGCTATTGTTAACATGTATTCAAAATGTGGAAGCTTGGAAACTGCCATGCAAGTCTTTAATTTCATTGGAAATAAGCAGGATGTAGTGTTGTGGAACACGATGATATTGGCACTGGCTCACTATGGGTATGGTATAGAAGCAATTATGATGCTATATAATATGCTAAAATTAGGAGTGAAGCCAAATAGGGCCACTTTTGTTGGCATTCTAAATGCTTGTTGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTATTTAAGTCCATGACTGGTGGGCATGGTGTCGTCCCTGACCAAGAACACTATACTCGCTTAGCTAATCTTTTGGGTCAAGCTAGATCTTTTAATAAATCAGTGAAGGATCTGCAGATGATGGATTGTAATCCAGGTGACCATGGTTGTAATTCTTCGATGGGTCTATGTAGAATGCATGGGAATATAGATCATGAGACAGAAGTAGCTGCATTCCTTATTAAATTGCAGCCAGAATCTTCTGCTGCCTACGAATTTCTTGCAAGTACATATGCTTCACTTGGGAAATGGGAATTGGTTGAGAAAATAAGACATATTTTGGATGAGAGACAGGGGAGGAAAGGGTCAGGCTATTAG 1641 0.44 MPSPSFHNLCIVKSLLSNPSLPDAVSSLDLLRLKGIRLPSHVLATLLRHCSKTRSYREGKLIHLHLKLTGFKRPPTLLANHLISMYFSCGDFVQARKVFDKMDDRNLYTWNNMLSGYAKLGLLKQARSFFYQMPHKDHVSWNSMVAGYAHKGRFAEALRFYGHLRRLSVGYNEFSFASVLIVSVKLKDFELCRQIHGQVLVIGFSSNVVISSLIVDAYAKCGKLEDARRLFDGMPVRDVRAWTTLVSGYATWGDMKSGAELFSQMPKSNSCSWTSLIRGYARNGMGYEAIGVFRQMIRHQVRPDQFTLSTCLFACATIASLKHGRQIHAFLVLNNIKPNNVVVCAIVNMYSKCGSLETAMQVFNFIGNKQDVVLWNTMILALAHYGYGIEAIMMLYNMLKLGVKPNRATFVGILNACCHSGLVQEGLQLFKSMTGGHGVVPDQEHYTRLANLLGQARSFNKSVKDLQMMDCNPGDHGCNSSMGLCRMHGNIDHETEVAAFLIKLQPESSAAYEFLASTYASLGKWELVEKIRHILDERQGRKGSGY 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00961 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 241 271 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 214 239 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 139 168 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 108 138 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 80 107 IPR002885 -
Gma11g00961 546 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Gma11g00961 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Gma11g00961 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Gma11g00961 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 441 IPR002885 -
Gma11g00961 546 Pfam PPR repeat family 269 316 IPR002885 -
Gma11g00961 546 Pfam PPR repeat family 371 419 IPR002885 -
Gma11g00961 546 Gene3D Tetratricopeptide repeat domain 269 335 IPR011990 GO:0005515
Gma11g00961 546 SUPERFAMILY TPR-like 136 525 IPR011990 GO:0005515
Gma11g00961 546 Gene3D Tetratricopeptide repeat domain 11 167 IPR011990 GO:0005515
Gma11g00961 546 Gene3D Tetratricopeptide repeat domain 367 545 IPR011990 GO:0005515
Gma11g00961 546 Pfam PPR repeat 344 364 IPR002885 -
Gma11g00961 546 Pfam PPR repeat 212 237 IPR002885 -
Gma11g00961 546 Pfam PPR repeat 108 136 IPR002885 -
Gma11g00961 546 Pfam PPR repeat 80 106 IPR002885 -
Gma11g00961 546 Pfam PPR repeat 139 167 IPR002885 -
Gma11g00961 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 267 - -
Gma11g00961 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 135 545 - -
Gma11g00961 546 Gene3D Tetratricopeptide repeat domain 171 268 IPR011990 GO:0005515
Gma11g00961 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00961 Gma-Chr11 8147537 8149177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00961 28 545 Glycoside Hydrolase AT3G49170 27.395 7.54e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00961 - - gmx:100798659 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00289 12 2296338 2298307 Gma11g00961 11 8147537 8149177 GST