Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00288 ATGGATTATGAGGCTGATAAATTTGGTGCCAATGGAGAGGGAGAGAGTAAGAGAGTGGGTGAAGTGGTTTCTGAGGAGAGTGTAGCTGGGTCTGATCAAACGAAGGGTTTAGAAGCAGAGTATGTTTTTCAGGAGGCAATGGAGCCACGGGAGCAGGTCCATGATCAGGGATCCAAACTCAATTCGGAGGATGCGGTAGTTGATGAACAAGACGATACTGAAACCGGTAGTGCATTGACTTCTGCTTTGGCGGATGGAAATACTCCAGATGCCGTGCAGGAGCCCGATTCCTTTGAGCAGGCTGTTGGAGCTGATACTGACTCTGGGAAGCTCGGGGAAGATGAAGTAATTGCTAAGCAGGACTTGGAGGAAAGGGATGGGCAGGGAAATGATTATGTTCCTTTGGATGGTGTTGACTCTGGAGTGCCTGGAGATGGAGAAATTTGTGATGAGTCCTGTGGTGTGGGGGATGATAATCTGGAGAGTAGTGATGGGGGTGATGGAAAGGAAGAATCTGGGTTAAATTCTGACAGAGAGATGTTAGTTCTGGAGAATGGTTCTATGGTGGATGGAAATTCTGGTTTGGTGAGTGAGAAGGCTGAAATTGATGATTCTGAATTCATGACTCCTAGAGAGAATGGTGGTATAGTGTTGGACAATGGAAGCACAGATGAGGTGGATGGTGTTGCTACTGAGGCTATTATGAAATCTGAATCCAGTGAGGTCATTCCAGCCCAAGGTACTGATGCTGGGGATTTGAAGGAGTGTGCCCCAGATCCTGAACTTGGAGATGACAAGATAGAGGTAAAGTTAAATGCTTCAGTTGATCCTTCTGGTGAGATTCAAGATGATACATCTGAAGAAGTACACGGCAATTCAGCTCACATGACTTTAGAACATCAAGATGAAGTAACTAGGGATATGAAGGATGATTCTCTGGGCACTAATATGAGTCACAAAGACAGAAATGGTGAAGAAATGAGTACTGATGGCATTCAAAATACTGAAATAAGAGATTGTGGGAATGGCTATGCTGAAGCTGGAAGCTCACCACCCTTTTTGGAAAATTCCTCTAATCAGCCACTGTCTGTTCAGGAGGCTAGTGCAGCTGAACCAAAGGAAGCTAGTAATAAGGATGATCAATCTCAGATTTCTGATGAAGAGCATAGAGATCATGACAACACTTCTGTGGTTGAGGAGCCTGAAAGCATACAGGAGAAGATTATTCAAGTGACTGGAGAGCAACATGTTCAACCTGCAGCAGATATTTCTTCTTCATCTGAAAGGTCTGCCGGTACTGTGCCTACTCCTGTCCGTCCTTCATCTGAAAATTCTGCTGCCGCTGGGCCCACTCCTGTTCATCCAACTGGCCTTGGTCGTGCAGCTCCATTACTGGAACCTGCATCTCGGGTAGTGCAGCAACCTCGTGCTAATGGTACTGTATCTAATAGTCAGTCCCAGCAAATGGAGGACTCCTCGAGTGGGGAGGCTGAGGAGTATGATGAGACACGTGAGAAACTTCAGATGATTAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGGCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGATTGGCTGAGCAACTCAGAGGAAGGAATGGGGGGCGTGTTGGTGCTTTTAGCTTTGATCGTGCAAGTGCAATGGCTGAGCAGCTCGAAGCAGCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTCCTTGGAAAGACGGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGATGAGGTTAAGTTTAATACCAGTGCTTTTCATATGGGAACCAAGAAGGTTCAGGATGTTGTGGGAACAGTGCAGGGCATTAAGGTACGGGTCATTGATACACCGGGACTTCTACCTTCCTGGGCTGACCAGCGAAGCAATGAGAAGATCCTCCAGTCTGTTAAGCACTTTATTAAGAAAACTCCACCTGATATTGTGTTGTATCTTGATAGGTTAGACATGCAGAGCAGGGATTTTAGTGATATGCCACTCTTGCGCACAATTACTGAAATTTTTGGGCCATCCATTTGGTTCAATGCCATTGTGGTTCTGACTCATGCTGCATCTGCTCCTCCTGAAGGCCCTAATGGTACTGCTTCCAGTTATGACACGTTTTTTACTCAACGTTCTCATGTTGTGCAGCAAGCCATTCGACAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCCTTGGTGGAGAACCATTCTGCTTGCAGAACAAATAGGGCTGGTCAGAGAGTATTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTACTTCTATCTTTTGCCTCTAAAATTCTGGCTGAAGCCAATGCTCTTCTCAAGTTACAAGATAGTCCACCTGGGAAGCCATATGTAGCTCGAGCAAGAGCGCCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCAAGACCGCAATTAAAGTTGCCAgaggagcagtttggtgatgaggacagtcttgatgatgaCCTTGATGAATCATCAGAGTCTGATGATGAAAATGAACATGACGACTTGCCGCCATTTAAACCTTTAACTAAGGCCCAGGTGGAAAAGCTGTCTAAAGCTCATAAGAAAGCATATTTTGATGAGTTGGAGTATAGAGAGAAGCTTTTGATGAAGAAGCAATTGAAGGAAGAAAAAAAGCGACGGAAAATGTTGAAGAAAATGGCAGAATCAGCAAAAGATCTACCAAGTGACCATAGTGAAAATGTGGAAGAAGAAAGTGGTGGTGCAGCTTCTGTTCCTGTTCCCATGCCAGATTTGGCCCTGCCTGCTTCTTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTTGATTCGTCATCAAATCAGTGGCTTGTAAGACCTGTTTTAGAAACTCACGGATGGGATCATGATGTGGGTTATGAAGGGTTGAATGTAGAGAGATTGTTCGTTCTCAAGGAAAAGATACCTTTATCTTTCTCTGGTCAGGTTACTAAAGATAAAAAGGATGCTAATGTTCAGATGGAAATATCCAGTTCAGTTAAGCATGGGAAAGGGAAAGCAACTTCATTAGGTTTTGATTTGCAAACTGTGGGGAAGGACTTGGCTTATACATTACGCAGTGAGACAAGATTTACTAATTTTAGAAGAAATAATGCAACCGCTGGTCTCTCATTTACTTTACTTGGTGATGCCTTATCATCTGGATTGAAGATTGAAGACAAATTGGTTGCTAGTAAGCGATTCAAGCTGGTTGTCAGTGGTGGCGCAATGACAGGGCGTGGCGACATTGCTTATGGTGGCAGTTTGGAGGCCCAACTGAGAGATAAGGATTACCCTCTTGGTCGTTTCTTAACCACACTTGGCCTTTCTGTTATGGATTGGCATGGAGATCTTGCTGTTGGGTACAATGTGCAATCTCAGATCCCAGTAGGACGTTATACAAACCTTGTTGCCCGGGCCAATTTGAACAATCGAGGGGCCGGACAAATAAGTATTCGATTAAATAGTTCAGAACAGCTTCAAATTGCTTTGATTGGTCTCATCCCTCTCCTAAAGAAGCTAGTTGGTTATCATCAACAATTGCAGTTTGGACAATACTGA 3636 0.4384 MDYEADKFGANGEGESKRVGEVVSEESVAGSDQTKGLEAEYVFQEAMEPREQVHDQGSKLNSEDAVVDEQDDTETGSALTSALADGNTPDAVQEPDSFEQAVGADTDSGKLGEDEVIAKQDLEERDGQGNDYVPLDGVDSGVPGDGEICDESCGVGDDNLESSDGGDGKEESGLNSDREMLVLENGSMVDGNSGLVSEKAEIDDSEFMTPRENGGIVLDNGSTDEVDGVATEAIMKSESSEVIPAQGTDAGDLKECAPDPELGDDKIEVKLNASVDPSGEIQDDTSEEVHGNSAHMTLEHQDEVTRDMKDDSLGTNMSHKDRNGEEMSTDGIQNTEIRDCGNGYAEAGSSPPFLENSSNQPLSVQEASAAEPKEASNKDDQSQISDEEHRDHDNTSVVEEPESIQEKIIQVTGEQHVQPAADISSSSERSAGTVPTPVRPSSENSAAAGPTPVHPTGLGRAAPLLEPASRVVQQPRANGTVSNSQSQQMEDSSSGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFHMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWADQRSNEKILQSVKHFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTASSYDTFFTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPYVARARAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDESSESDDENEHDDLPPFKPLTKAQVEKLSKAHKKAYFDELEYREKLLMKKQLKEEKKRRKMLKKMAESAKDLPSDHSENVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVLKEKIPLSFSGQVTKDKKDANVQMEISSSVKHGKGKATSLGFDLQTVGKDLAYTLRSETRFTNFRRNNATAGLSFTLLGDALSSGLKIEDKLVASKRFKLVVSGGAMTGRGDIAYGGSLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAVGYNVQSQIPVGRYTNLVARANLNNRGAGQISIRLNSSEQLQIALIGLIPLLKKLVGYHQQLQFGQY 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00288 1211 MobiDBLite consensus disorder prediction 906 928 - -
Gma12g00288 1211 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 398 1205 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 829 865 - -
Gma12g00288 1211 CDD Toc34_like 550 795 - -
Gma12g00288 1211 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 455 1203 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Gma12g00288 1211 MobiDBLite consensus disorder prediction 162 177 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 351 366 - -
Gma12g00288 1211 Pfam AIG1 family 578 735 IPR006703 GO:0005525
Gma12g00288 1211 MobiDBLite consensus disorder prediction 275 461 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 476 502 - -
Gma12g00288 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 766 IPR027417 -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 1 22 - -
Gma12g00288 1211 Gene3D - 547 795 IPR027417 -
Gma12g00288 1211 ProSiteProfiles AIG1-type G domain profile. 575 804 IPR006703 GO:0005525
Gma12g00288 1211 MobiDBLite consensus disorder prediction 904 937 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 476 493 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 237 263 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 283 327 - -
Gma12g00288 1211 Coils Coil 898 918 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 73 87 - -
Gma12g00288 1211 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 398 1205 IPR045058 -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 108 130 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 372 400 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 44 66 - -
Gma12g00288 1211 Pfam Translocase of chloroplast 159/132, membrane anchor domain 936 1200 IPR024283 -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 836 856 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 1 177 - -
Gma12g00288 1211 MobiDBLite consensus disorder prediction 408 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00288 Gma-Chr12 2291306 2295641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00288 - - gmx:100810931 2308.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00288 12 2291306 2295641 Gma12g00288 12 2291306 2295641 ECH
Gma12g00288 12 2291306 2295641 Gma11g00960 11 8141886 8145845 GST