Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00262 ATGCCCGGAGCTGAGACTCACGATGTGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCTTCAGCTTCTTCCAGGACAAAAATCACGTCAACTGGAAGTCTAGCCCTGTCGTCCCCTTCAATGACCCCACTCTTCTCTTCGTCAACGCTGGTATGAACCAGTTCAAGCCAATATTTTTGGGAACTGCGGATCCTAACACTGGCTTGAGCAAGCTCTCTCGTGCTTTCAACACACAGAAGTGCATTCGAGCTGGTAGTAAACACAATGATCTTGATGATGTGGGGAAGGATACTTACCATCACACCTTCTTTGAGATGTTGGGCAATTGGTCATTTGGGGATTACTTTAAAGTAGAAGCCATCAGCTGGGCGTGGGATCTTCTAACCAAAGTTTACAAATTACCATCAGATTGCATTTATGCCACATATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGATCTTGAGGCTAGGGATATATGGCTCAAGTTTTTACCTCCGGGACGTGTACTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGCCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGCAACCGTGATGCTGCATCATTGGTTAATAACGATGATCCTACCTGCGTAGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTTCCTGCAAAGCATGTTGATATGGGCTTGGGTTTTGAACGTTTGACCTCTATACTTCAGGACAAAATGAGCAATTATGATACGGATGTCTTCTTGCCAATCTTTGACGTTATTCAGTGGGCAACTGGTGCCAGACCATATTCTGGGAAAGTTGGACCAGATGATGTAGATAATGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGAGGGTCGTGAGTATGTTCTGAGACGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGTTTTTTCAATGGGCTTGTAAGTATTGTGGTGAATGTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAACACACATACGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGGATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGATACTGAGTGGGGAGGCAATCTATATTATGCCTTGTGTTTTTTATTTCTTACTATTTTCTACTTATCAGCTGATGGCTGAAGAAAAGGGGTTAGTTGTTGATTTCAAAGGTTTCGATAGTGCTATGGAAGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGAGGCTGATGCTACCTCAGCATTGCACAAAAGGGGCATTGTCCCAACAGATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATACTGTTAATACCAGTGATGATATTGGGGTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCGCTTGAGGGCTTACATGCGTCATTTCAAGTGCGTAATGTTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGGACTGGTGTCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGCGCCCTTATAGCCCCTAACCATACCTGCACGCACATGTTAAATTTTGCCCTTAGGGAAGTACTTGGTGATCGTGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGGTTTGACTTTTCTCATGGCAAGCCTGTTGATGCTGACAATTTAAGGAGAATTGAATCAATTGTTAATGAGCAAATTAAAGCTGAGTTCGATGTAAGTGCAAAAGAGGCAACTCTTGCTGAAGCCAAGGGTATCAATGGTTTGCGAGCTGTTTTTGGGGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCAAAGAATGAAAAATGGTTATCTTTTTCGTCAGAGTTATGTGGAGGTACCCATATTTCAAACACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGAATACGCAGAATAACAGCTGTTACAACTGATCGTGCTTATGATGCAATGAAAGTGGCAGATGAATTTGATCAGCAAGTAGACGATGCGGCTAAGTTAGAAGGAAGTTTGCTAGAAGAGAAAGTTTCATCATTGAAAAGCAATATTGAAACTTTATCTATTCCTGCTGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGACTTCTGGATCAAGTAAGAAAAGCACAAAAGCTGGTTGCTGAGGAAAACAAGCGTAAAGCTTTAACGATTACAGCAGAGAAGGCGGAACTTGCTGCTTCAAATGGGAAAACTTTTTGCATATCTCACGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAAGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCTACTAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAGAAAGGAGGTCAAGGTAAGCTGGATGTGGCAGATTGGCTGAGTAATGCTTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCTACGGGTCAGGGTACAGAGGCATCACATTATAAGGTCAGTCCGGCCCCGGGGAGCGGGTGTATTGAGATAAGCCAGCGACTGAATCCGATGGCGAATGAGGGAAGCGACATTGACGAAGTGAACTATGCGTTGGATGGCGTGGGAGAAGAAGAAGAGGACGAAAATGCAGCACAGGAGGAGGATGACAATGACATGGAAGAAGATGAAGAGGAATATACTTTCAGGTTCAAAACCGGGATGAATCCTTTGGACTTTGTTGATGATAATGATGATTCTGGCATTCAACCCTACCAGCGGTTCGTGCGTCTTGAACGGGAAGCCCTTGCTGATAAAAAGCGAAAAGCACCTGAACAATGCCATAGTGAAGAACCACCTTCTAAGATGGCCAGGGAAGGTGATATTTCTGGGGCAAAGATAGCTGAGATAATGGAAGCAATGGATTATTATGGTATGCGCAAGAGATCGAGAAAGCCTAAAAAAAGAGGCAGGCGAAAAGGATCAAAGAATAGAGTTGACCCTAAGCTAACACAGATGCAGGGTGATGCCACGTTTCACTATGCATGTGGCGATTATGACCGGGCTAAAGCTGTGTTGTGTGAAGTTATTAGGCTGGCACCAAATTTGCATGAGTCGTATCACACCCTTGGACTTGTCTATACTTCACTCCAGGATTATAAAAGAGCTATGGCCTTATACTTGATTGCTGCTCATTTGGATCCAAAAGAGTCACCTCTTTGGAAAACGATTTTTACCTGGTCCATAGAACAAGGTTATGTTGATCAAGCCGGTTATTGTCTTTTAAAAGCAATAAAAGCAGATCCCAAAGATGTTACTCTTAGATTTCATCTTGCAAGGCTTTATGCTGAACTTGGACATTATCAAAAAGCTGCTGTGACATATGAGCAAGTGCATAAACTCTGTTGTGAGAATATTGATGCACTGAAAGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATACTCCATTCAAATTCTTGAAGACTATATTAAGAGTCAACCTGATGGAGCAAATGTAAGTGTAGTTGATCTGCTGGGTACCGTATTGATGGAAACTAAGGCACATGATAGAGCTCTGCAGCATATTGAACATGCTCAAACAGTAAATGCGAGGAAAGAATTACCTTTGAATTTGAAAATTAAGGCCGGAATTTGCCATGCTCATCTTGGAAACATGGAGAGGGCTCAGGCTCTCTTTAATGATTTGAAACCAGAGAATGCAAGCAAGCATATTGACTTGGTTACTAAGGTTGCAGACTCATTAATGGGTCTTGAACATTATAATCCTGCATTGAATTATTATTTGATGTTGGAAGGAAATATTGAAAAAGAAAAT 4134 0.4274 MPGAETHDVEWPAKRVRDTFFSFFQDKNHVNWKSSPVVPFNDPTLLFVNAGMNQFKPIFLGTADPNTGLSKLSRAFNTQKCIRAGSKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWDLLTKVYKLPSDCIYATYFGGDDKSGLAPDLEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCVEIWNLVFIQFNREADGSLKPLPAKHVDMGLGFERLTSILQDKMSNYDTDVFLPIFDVIQWATGARPYSGKVGPDDVDNVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSIVVNVMGDVFPELKQQETHIRNVIEEEEESFGRTLIKGIEKFETAVRHVQGKILSGEAIYIMPCVFYFLLFSTYQLMAEEKGLVVDFKGFDSAMEAARERSRSAQTKQAGGAIVMEADATSALHKRGIVPTDDSFKYAWFKDHESVVKAIYTGSEFVDTVNTSDDIGVVLESTSFYAEQGGQIFDTGSLEGLHASFQVRNVQVYGGFVLHIGNGTGVSVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGDRVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAEFDVSAKEATLAEAKGINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPKNEKWLSFSSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADEFDQQVDDAAKLEGSLLEEKVSSLKSNIETLSIPAAKKADIKTKIARLLDQVRKAQKLVAEENKRKALTITAEKAELAASNGKTFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVVCAGVPEKGGQGKLDVADWLSNALGPLKGRCGKGKGGLATGQGTEASHYKVSPAPGSGCIEISQRLNPMANEGSDIDEVNYALDGVGEEEEDENAAQEEDDNDMEEDEEEYTFRFKTGMNPLDFVDDNDDSGIQPYQRFVRLEREALADKKRKAPEQCHSEEPPSKMAREGDISGAKIAEIMEAMDYYGMRKRSRKPKKRGRRKGSKNRVDPKLTQMQGDATFHYACGDYDRAKAVLCEVIRLAPNLHESYHTLGLVYTSLQDYKRAMALYLIAAHLDPKESPLWKTIFTWSIEQGYVDQAGYCLLKAIKADPKDVTLRFHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKCGQVEYSIQILEDYIKSQPDGANVSVVDLLGTVLMETKAHDRALQHIEHAQTVNARKELPLNLKIKAGICHAHLGNMERAQALFNDLKPENASKHIDLVTKVADSLMGLEHYNPALNYYLMLEGNIEKEN 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00262 1378 Coils Coil 974 994 - -
Gma12g00262 1378 PANTHER ALANYL-TRNA SYNTHETASE 1 936 - -
Gma12g00262 1378 Pfam DHHA1 domain 810 934 IPR003156 GO:0003676
Gma12g00262 1378 SMART tRNA_SAD_4 685 744 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gma12g00262 1378 MobiDBLite consensus disorder prediction 1076 1099 - -
Gma12g00262 1378 MobiDBLite consensus disorder prediction 1035 1054 - -
Gma12g00262 1378 Gene3D - 584 760 - -
Gma12g00262 1378 Gene3D Tetratricopeptide repeat domain 1104 1371 IPR011990 GO:0005515
Gma12g00262 1378 SMART tpr_5 1134 1167 IPR019734 GO:0005515
Gma12g00262 1378 SMART tpr_5 1272 1305 IPR019734 GO:0005515
Gma12g00262 1378 SMART tpr_5 1100 1133 IPR019734 GO:0005515
Gma12g00262 1378 SMART tpr_5 1202 1235 IPR019734 GO:0005515
Gma12g00262 1378 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 264 466 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Gma12g00262 1378 PANTHER BNACNNG61840D PROTEIN 1 936 - -
Gma12g00262 1378 Pfam Tetratricopeptide repeat 1190 1221 - -
Gma12g00262 1378 MobiDBLite consensus disorder prediction 1035 1055 - -
Gma12g00262 1378 SUPERFAMILY Translation proteins 510 583 IPR009000 -
Gma12g00262 1378 Pfam Tetratricopeptide repeat 1114 1167 - -
Gma12g00262 1378 MobiDBLite consensus disorder prediction 1078 1093 - -
Gma12g00262 1378 Gene3D - 837 938 - -
Gma12g00262 1378 Coils Coil 797 837 - -
Gma12g00262 1378 SUPERFAMILY TPR-like 1107 1367 IPR011990 GO:0005515
Gma12g00262 1378 Hamap Alanine--tRNA ligase [alaS]. 1 952 IPR023033 GO:0004813
Gma12g00262 1378 PRINTS Alanyl-tRNA synthetase signature 89 100 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 PRINTS Alanyl-tRNA synthetase signature 244 257 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 PRINTS Alanyl-tRNA synthetase signature 325 338 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 PRINTS Alanyl-tRNA synthetase signature 301 317 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 PRINTS Alanyl-tRNA synthetase signature 217 228 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 685 743 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gma12g00262 1378 ProSiteProfiles TPR repeat profile. 1134 1167 IPR019734 GO:0005515
Gma12g00262 1378 SUPERFAMILY Class II aaRS and biotin synthetases 13 263 IPR045864 -
Gma12g00262 1378 Pfam tRNA synthetases class II (A) 16 585 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Gma12g00262 1378 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 11 757 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Gma12g00262 1378 SUPERFAMILY ThrRS/AlaRS common domain 583 760 IPR018163 GO:0000166
Gma12g00262 1378 Gene3D - 495 583 - -
Gma12g00262 1378 Gene3D Bira Bifunctional Protein; Domain 2 12 260 IPR045864 -
Gma12g00262 1378 TIGRFAM alaS: alanine--tRNA ligase 16 927 IPR002318 GO:0000166|GO:0005737
Gma12g00262 1378 CDD AlaRS_core 13 259 - -
Gma12g00262 1378 MobiDBLite consensus disorder prediction 973 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00262 Gma-Chr12 2070179 2093760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00262 K01872 - gmx:100805071 1783.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00262 12 2070179 2093760 Gma12g00262 12 2070179 2093760 ECH
Gma12g00262 12 2070179 2093760 Gma11g00937 11 7856807 7874961 GST