Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00248 ATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATCTGTTGTTCCATGGAAGGAACACTGAATGCAGTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGGCCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCATCTCCGCAGGGCTTGCTATCTATGATACGATGCAGTATATTCGGTCTCCGGTCAATACAATATGTATGGGTCAAGCTGCATCCATGGGTTCTCTTCTATTGGCGGCGGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCGACAATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTAAATGAGTTGTATTCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGAGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGAACCAGATGGAGGAGAATAAGAAGAAGGAGAAGGAGAACTTAATTCGGATCCAAAGGATAAGGGCATGA 705 0.4965 MRGVVKAFARNLLFHGRNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAISAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYSKHTGQSVEVIQTNMDRDNFMTPQEAKEFGLIDENQMEENKKKEKENLIRIQRIRA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00248 234 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 216 - -
Gma12g00248 234 Pfam Clp protease 37 212 IPR023562 -
Gma12g00248 234 Coils Coil 212 232 - -
Gma12g00248 234 ProSitePatterns Endopeptidase Clp serine active site. 114 125 IPR018215 -
Gma12g00248 234 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 216 IPR023562 -
Gma12g00248 234 CDD S14_ClpP_2 43 212 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 ProSitePatterns Endopeptidase Clp histidine active site. 136 149 IPR033135 -
Gma12g00248 234 SUPERFAMILY ClpP/crotonase 35 212 IPR029045 -
Gma12g00248 234 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 27 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 PRINTS Clp protease catalytic subunit P signature 83 103 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 PRINTS Clp protease catalytic subunit P signature 43 58 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 PRINTS Clp protease catalytic subunit P signature 114 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 PRINTS Clp protease catalytic subunit P signature 135 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00248 234 Gene3D - 17 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00248 Gma-Chr12 1923606 1927449 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00248 K01358 - gmx:100791303 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00248 12 1923606 1927449 Gma11g00924 11 7725572 7726858 GST